View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_16 (Length: 491)
Name: NF13864_high_16
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 470
Target Start/End: Complemental strand, 52726268 - 52725807
Alignment:
| Q |
9 |
caaaggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgcaaatcaattgaccgaaagttt |
108 |
Q |
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| T |
52726268 |
caaaggtattaagaaactattacttacgaattggagaattatatattatttgttgaagttcctaataacttgcccttgtaaatcaattgaccgaaagttt |
52726169 |
T |
|
| Q |
109 |
tgggatgcactaaatcttagataaaaagaacaagtattatttagatggaaatggaaacactaacagagacccacacatataatttctaagacgtgaaact |
208 |
Q |
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| T |
52726168 |
tgagatgcactaaatcttagataaaaagaacaagtatcatttagatggaaatggaaacactaacagagacccacacatatgatttctaagacgtgaaact |
52726069 |
T |
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| Q |
209 |
ttaagttgtttcaaggcgggccaagcatgaagattttgattgtcactcttaaagggtatcatcatcatcatttcggttggattcaatcaatatctctaat |
308 |
Q |
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| T |
52726068 |
ttaagttgtttcaaggcgggccaagcatgaagattttgattgtcactctcaaagggtatcatcatcatcatttcggttggattcaatcaatatctctaat |
52725969 |
T |
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| Q |
309 |
ttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaaaactaactatagctaattgtgtttgaaac |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725968 |
ttctcatcattgcacatgtttaacgacatttacttaatcaggtgcatgaatctcaagcacaaaaagtacaaaactaactatagctaattgtgtttgaaac |
52725869 |
T |
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| Q |
409 |
gaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgacc |
470 |
Q |
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| T |
52725868 |
gaccagcaagatagaagcaataaaccatatgtgtatgtgccatgctttatcaatggccgacc |
52725807 |
T |
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