View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_17 (Length: 491)
Name: NF13864_high_17
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Original strand, 51426269 - 51426740
Alignment:
| Q |
1 |
atcatctaacgatctaaccatccttgatcaccacttcatccacctttgactaccactattaccaccatcagtcagcactctgactattgtcaaccattgc |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51426269 |
atcatctaacgatctaaccattcttgatcaccacttcatcaacctttgactaccactattaccaccatcagtcagcactctgactattgtcaaccattgc |
51426368 |
T |
|
| Q |
101 |
cagccaccactttgattatcatcaatcactaagaaccatcaccgttcaccacaccaactaccacgatgactacttatccgaccaccatnnnnnnntattg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
51426369 |
cagccaccactttgattatcatcgatcactaagaaccatcaccgttcaccacaccaactaccacaatgactacttatccgaccaccataaaaaaatattg |
51426468 |
T |
|
| Q |
201 |
gtcaccacaatcgatcaccacttcatccacctgcaattaacaatcctaccaccactctagccactactccgaccaccaaaaatcaccaccattcaccaca |
300 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51426469 |
gtcactgcaatcgatcaccacttcatccacctgcaatcaacaatcctaccaccactctagccactactccgaccaccaaaaatcaccaccattcaccaca |
51426568 |
T |
|
| Q |
301 |
ttgactattactcactctgtctgccatccatcaccaccaactaccacattaccaaccactgcggtgatcgccaaccaccactgatcaccacttcgacaaa |
400 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
51426569 |
ttgactactactcactctgtctgccatccatcaccaccaactaccacattaccaaccactgcggcgaccgccaaccaccactgatcaccacttcgacaaa |
51426668 |
T |
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| Q |
401 |
catttgcgagaaccaccatttttaaacattattaaaattaccaccactttgaccatgtttgtatgttctttt |
472 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51426669 |
catttgcgagaaccaccattttcaaacattattaaaattaccaccactttgaccatgtttgtatgttctttt |
51426740 |
T |
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