View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_23 (Length: 424)
Name: NF13864_high_23
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 6e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 12874939 - 12874693
Alignment:
| Q |
1 |
ataaaagtgatatgaggataataaaatatcagcttattgactgacca------tgcttttaacgtgattggataaacgtatatttaaagtgcttttggga |
94 |
Q |
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| T |
12874939 |
ataaaagtgatttgaggataataaaatatcagcttattgactgaccaagaccatgcttttaacgtgattggataaacgtatatttaaagtgcttttggga |
12874840 |
T |
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| Q |
95 |
gagatgccaggtactactaccaactgacggatcacattcatatctgttattgtccataataatgcaaattatgaaattgataaaaaaggatagtaaagga |
194 |
Q |
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| T |
12874839 |
ga--tgccag----tac-actaactgtcggatcacattcacatttgttattgttcataataatgcaaatta---aattgataaaaaaggatagtaaagga |
12874750 |
T |
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| Q |
195 |
aagaaataaatatttgtacgaaaagaataagatagtaagggaaagatttcttttttt |
251 |
Q |
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| T |
12874749 |
aagaaataaatatttgtacgaaaataatacgatagtaaaggaaagatttcttttttt |
12874693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 350 - 409
Target Start/End: Complemental strand, 12874607 - 12874548
Alignment:
| Q |
350 |
ttaagtatgcaatagacaaatatgaacctggactagaaaacatctacatacgtaattatt |
409 |
Q |
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| T |
12874607 |
ttaagtatgcaatagacaaatatgaacctggactagaaaacatctacatacgtaattatt |
12874548 |
T |
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