View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_24 (Length: 421)
Name: NF13864_high_24
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_24 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 421
Target Start/End: Original strand, 43585061 - 43585462
Alignment:
| Q |
14 |
aaataaaaaggtagggagttgaattttgtcttcaacattatcctcttgtgagaatactggggctgatcttcatccccacattttctttaatcatatnnnn |
113 |
Q |
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| T |
43585061 |
aaataaaaaggtagggagttgaattttgtcttcaacattatcctcttgtgagaatactggggctgatcttcatccccacattttctttaatcatataaaa |
43585160 |
T |
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| Q |
114 |
nnntatcgcaccctctcaaatagtgagccacagtttgtatcctttgtttgattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcat |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585161 |
aaatatc------tctcaaatagtgagccacagtttgtatcctttgtttgattcctcaactcaatcaacacagaaaaaatagtagtagacagttgttcat |
43585254 |
T |
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| Q |
214 |
ccttagggttttccttctctcttcaaatatgtaccctagctagattactatcttcaaccaccaacactcattcttcagacaatacagtgcaaatagtata |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585255 |
ccttagggttttccttctctcttcaaatatgtaccctagctagattactatcttcaaccaccaacactcattcttcagacaatacagtgcaaatagtata |
43585354 |
T |
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| Q |
314 |
cccctctcatcctcttccaagactgtagcactgaattgacaacaacttgcatgcattacaccagaattaatcattgtgaaatatcaattattttatccgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43585355 |
cccctctcatcctcttccaagactgtagcactgaattgacaacaacttgcatgcattacaccagaattaatcattgtgaaatatcaattattttatccgg |
43585454 |
T |
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| Q |
414 |
gtaatcat |
421 |
Q |
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|||||||| |
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| T |
43585455 |
gtaatcat |
43585462 |
T |
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