View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_28 (Length: 397)
Name: NF13864_high_28
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 55689527 - 55689157
Alignment:
| Q |
13 |
cagactcattcatgtcacaagttcacaacccttcactcaatcctacagaaaggcaaatcctcaacaagttttcaatatcatacaaataggtccaacaaag |
112 |
Q |
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| T |
55689527 |
cagactcattcatgtcacaagttcacaacccttcactcaatcctacagaaaggcaaatcctcaacaagttttcaatatcatacaaataggcccaacaaag |
55689428 |
T |
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| Q |
113 |
ctcgggtttgaagaaaaatcagtatgaccagtactcgatatttcaagttcattgtcatcaagcattataaggctttcggttaaaacaagaatattatcaa |
212 |
Q |
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| T |
55689427 |
ctcaggtttgaagaaaaatcagtatgatcagtactcgatatttcaaggtcatcgtcatcaagcattataaggctttcggttaaaacaagaatattatcaa |
55689328 |
T |
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| Q |
213 |
taatcatagtaataagatagcaacatacaccataaaacaaaatctagcaagaaatgacatggatatgtagatgaaccacaaattagtcaaccaaacgatc |
312 |
Q |
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| T |
55689327 |
taatcatagtaataagatagcaacatacaccataaaacaaaatctagcaagaaatgacatggatatgtagatgaaccacaaattagtcaaccaaacgatc |
55689228 |
T |
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| Q |
313 |
ttgaagacatggtttgtaagctaaaagtcaatttgtttttcacttggcctagaaatcatctatcataataa |
383 |
Q |
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| T |
55689227 |
ttgaagacatggtttgtaagctaaaagtcaatttgtttttcacttggcctagaaatcatctatcataataa |
55689157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 100
Target Start/End: Complemental strand, 55689635 - 55689547
Alignment:
| Q |
12 |
acagactcattcatgtcacaagttcacaacccttcactcaatcctacagaaaggcaaatcctcaacaagttttcaatatcatacaaata |
100 |
Q |
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| T |
55689635 |
acagactcatttatatcacaagttcataacccctcagtcattcctaaaaaaaggcaaattttcaacaggctatcaatatcttacaaata |
55689547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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