View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_35 (Length: 360)
Name: NF13864_high_35
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_35 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 19 - 353
Target Start/End: Original strand, 17820615 - 17820949
Alignment:
| Q |
19 |
agctcatgtatcggaagtatctcacattccaactttggtcacgacaaaagaccaaaacttgcatgtactcttgtccttattaaccaagtccaccacacac |
118 |
Q |
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| T |
17820615 |
agctcatgtatccgaagtatctcacgttccaactttggtcacgacaaaagaccaaaacttgcatgtactcttgtccttattaacaaagtccaccacacac |
17820714 |
T |
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| Q |
119 |
attcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgt |
218 |
Q |
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| T |
17820715 |
attcaaaatgctatggacacagccagtgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgactgtgaacaactaatggacttgt |
17820814 |
T |
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| Q |
219 |
ccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaacca |
318 |
Q |
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| T |
17820815 |
ccatgaacagaatttgggacacgatgttaaagctaacaaaaaataatattgactcacagcaagatgcacatacatggctaagcagtgtgctcactaacca |
17820914 |
T |
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| Q |
319 |
tgcaacttgcttggatggattagaaggttcatctc |
353 |
Q |
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| T |
17820915 |
tgcaacttgcttggatggattagaaggttcatctc |
17820949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 17806919 - 17807167
Alignment:
| Q |
98 |
ttaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtgact |
197 |
Q |
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| T |
17806919 |
ttaaccaaatccaccacacacattcgaaaggccatggacacggctaatgttatcaaacgccgaattaacagccctagagaagaaaatgctttgaatgtct |
17807018 |
T |
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| Q |
198 |
gtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatggct |
297 |
Q |
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| T |
17807019 |
gtgaaaaactaatgaacttgtccatggaaagagtttgggactcagtgttaactctcacaaaagataatatggactcacagcaagatgcacacacttggct |
17807118 |
T |
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| Q |
298 |
aagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggt |
346 |
Q |
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| T |
17807119 |
aagtagtgtgctcacaaaccatgcaacttgtttggatggattagaaggt |
17807167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 95 - 353
Target Start/End: Original strand, 17776224 - 17776482
Alignment:
| Q |
95 |
ttattaaccaagtccaccacacacattcaaaatgctatggacacagccaatgttatcaaacgccgaattaacagccctagagaagaaattgctttgagtg |
194 |
Q |
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| T |
17776224 |
ttattaaccaaatccaccgcacacattcgaaaggcaatggacacggctaatgtgatcaaacgccgagttaatagccctagagaggaaattgctttgaatg |
17776323 |
T |
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| Q |
195 |
actgtgaacaactaatggacttgtccatgaacagaatttgggacacgatgttaaagctaacaacaaataatattgactcacagcaagatgcacatacatg |
294 |
Q |
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| T |
17776324 |
actgtgaggaattaatggatttgtccatggatagagtttgggactcagtgttgactctaaccaaaaataacattgactcacagcatgatgcacacacatg |
17776423 |
T |
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| Q |
295 |
gctaagcagtgtgctcactaaccatgcaacttgcttggatggattagaaggttcatctc |
353 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
17776424 |
gctaagtagtgtgctcactaaccatgcaacttgtttggatggattagaaggttcatctc |
17776482 |
T |
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