View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_high_4 (Length: 623)

Name: NF13864_high_4
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_high_4
NF13864_high_4
[»] chr3 (8 HSPs)
chr3 (106-447)||(16892994-16893335)
chr3 (243-408)||(51524823-51524988)
chr3 (264-421)||(26796840-26796997)
chr3 (296-395)||(31067144-31067244)
chr3 (244-355)||(29346807-29346918)
chr3 (110-211)||(24347280-24347381)
chr3 (279-355)||(35526596-35526672)
chr3 (273-407)||(21844920-21845054)
[»] chr2 (7 HSPs)
chr2 (106-362)||(8413679-8413935)
chr2 (240-403)||(14296254-14296417)
chr2 (243-408)||(18811704-18811869)
chr2 (244-397)||(31092283-31092436)
chr2 (241-397)||(37344586-37344742)
chr2 (240-407)||(18693061-18693225)
chr2 (269-393)||(13502653-13502777)
[»] chr1 (13 HSPs)
chr1 (242-447)||(50903480-50903685)
chr1 (240-447)||(49491876-49492082)
chr1 (263-441)||(17114733-17114911)
chr1 (244-393)||(13061962-13062111)
chr1 (243-407)||(41035024-41035188)
chr1 (273-440)||(19394156-19394323)
chr1 (110-238)||(49491646-49491774)
chr1 (243-362)||(3374305-3374424)
chr1 (122-239)||(34566070-34566187)
chr1 (272-347)||(14344072-14344147)
chr1 (265-340)||(34566268-34566343)
chr1 (155-236)||(50903291-50903369)
chr1 (273-339)||(39332359-39332425)
[»] chr7 (4 HSPs)
chr7 (240-447)||(26449532-26449737)
chr7 (271-355)||(19407870-19407954)
chr7 (158-226)||(26449380-26449448)
chr7 (273-407)||(33191235-33191369)
[»] chr6 (5 HSPs)
chr6 (444-559)||(17247791-17247906)
chr6 (240-397)||(25167810-25167967)
chr6 (240-441)||(4263365-4263563)
chr6 (241-407)||(10989981-10990147)
chr6 (240-375)||(3949323-3949458)
[»] chr4 (7 HSPs)
chr4 (241-407)||(16832137-16832303)
chr4 (240-407)||(24239839-24240003)
chr4 (240-397)||(37049967-37050125)
chr4 (366-447)||(12579947-12580028)
chr4 (272-441)||(19852407-19852576)
chr4 (241-441)||(16593766-16593966)
chr4 (172-227)||(9241671-9241725)
[»] chr8 (6 HSPs)
chr8 (239-407)||(27786782-27786950)
chr8 (272-441)||(8831250-8831419)
chr8 (264-407)||(36206440-36206583)
chr8 (244-397)||(29369070-29369223)
chr8 (302-440)||(399778-399916)
chr8 (270-441)||(28225739-28225910)
[»] chr5 (8 HSPs)
chr5 (239-405)||(36868251-36868417)
chr5 (240-397)||(788271-788428)
chr5 (244-397)||(19215349-19215502)
chr5 (158-224)||(36150489-36150555)
chr5 (334-407)||(37307257-37307330)
chr5 (240-320)||(36150641-36150721)
chr5 (296-407)||(15188023-15188131)
chr5 (240-290)||(32278702-32278752)
[»] scaffold0531 (1 HSPs)
scaffold0531 (241-395)||(10228-10382)


Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 106 - 447
Target Start/End: Complemental strand, 16893335 - 16892994
Alignment:
Q  106 ttatatcacagagaactataacaaggaaagcttgtgcaaatcctgaattaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcag 205  Q
    |||||||||||||| ||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16893335 ttatatcacagagatctataacaaggaaggcttgtgcaaattctgaatgaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcag 16893236  T
Q  206 aagctactagcttaacacccagattcacaaagatttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcat 305  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||    
T  16893235 aagctactagcttaacacccaggttcacagagatttgaaccaactattcggtatatggcaaggcagctttggaggcacccttttgagcacgggtcctcat 16893136  T
Q  306 tccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctca 405  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16893135 tccggctgagttgaacctagtaggcttcactttgttcacctgcttcttttgctttttatctgccttagtgctctctgacagacttggatagtgctgctca 16893036  T
Q  406 aaagttgatgtgatggcttcatcactgtcctcttcctcaact 447  Q
    || ||||||||||||||||||||| |||||||||||||||||    
T  16893035 aaggttgatgtgatggcttcatcattgtcctcttcctcaact 16892994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 243 - 408
Target Start/End: Complemental strand, 51524988 - 51524823
Alignment:
Q  243 aaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttc 342  Q
    |||||||||||  | || || ||||| |||||||||||  ||||||||  || |||||||||||||| ||||||| ||||||  |||| ||||||| | |    
T  51524988 aaccaactattttgcatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaggcctcactttatgc 51524889  T
Q  343 acctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaa 408  Q
    ||||||||||||| |||| | || |||||| | ||||| || ||||||||||||||||||||||||    
T  51524888 acctgcttcttcttctttctctcagccttattgctctcagatagacttggatagtgctgctcaaaa 51524823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 264 - 421
Target Start/End: Original strand, 26796840 - 26796997
Alignment:
Q  264 caaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgcttttta 363  Q
    ||||||| |||| |||| ||| |||||   |||| |||||||| |||||||||| ||||| |||| |||||||||||| || |||||||||| |||| |     
T  26796840 caaggcaactttagaggcaccattttgggtatggttcctcatttcgactgagttaaagctggtagacttcactttgttaacatgcttcttcttctttctc 26796939  T
Q  364 tctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatgg 421  Q
    ||||||||||| ||||| || ||||| |||| |||||||||||||  |||| ||||||    
T  26796940 tctgccttagtgctctcagatagactcggatggtgctgctcaaaatctgatatgatgg 26796997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 296 - 395
Target Start/End: Complemental strand, 31067244 - 31067144
Alignment:
Q  296 gggtcctcattcc-gactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggat 394  Q
    ||||||||||||| ||||||||| ||||||| | || ||||||||| ||| |||||||||| |||||| ||||||||||| ||||| || ||||||||||    
T  31067244 gggtcctcattcccgactgagttaaagctagcaagcctcactttgtgcacatgcttcttcttctttttctctgccttagtgctctccgatagacttggat 31067145  T
Q  395 a 395  Q
    |    
T  31067144 a 31067144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 355
Target Start/End: Complemental strand, 29346918 - 29346807
Alignment:
Q  244 accaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttca 343  Q
    ||||||||||  |||| || |||||| ||||||||||||| ||||||  || |||||||||||||| || |||| ||||||  |||| |||| |||||||    
T  29346918 accaactattatgtatctgtcaaggcggctttggaggtactcttttgtgcacgggtcctcattccggctaagttaaagctataaggcatcacgttgttca 29346819  T
Q  344 cctgcttcttct 355  Q
    ||||||||||||    
T  29346818 cctgcttcttct 29346807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 110 - 211
Target Start/End: Complemental strand, 24347381 - 24347280
Alignment:
Q  110 atcacagagaactataacaaggaaagcttgtgcaaatcctgaattaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagc 209  Q
    |||||| |||||||||| |||||| |||| |||||||||| ||| || ||||||||||| | ||| |||||||||| ||||||||  |||||| ||||||    
T  24347381 atcacaaagaactataataaggaatgcttttgcaaatcctcaatgaattaaactaacaaagcaaccgctaaaagaacaacaacaggaaaatggtagaagc 24347282  T
Q  210 ta 211  Q
    ||    
T  24347281 ta 24347280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 355
Target Start/End: Original strand, 35526596 - 35526672
Alignment:
Q  279 ggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttct 355  Q
    ||||||||||||  || |||||||||||||| | ||||| ||||||| |||| ||||||||||||||||||||||||    
T  35526596 ggtacccttttgggcacgggtcctcattccggccgagttaaagctagaaggcatcactttgttcacctgcttcttct 35526672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 273 - 407
Target Start/End: Original strand, 21844920 - 21845054
Alignment:
Q  273 tttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcctta 372  Q
    ||||||||| ||||||||| || ||||||| ||| |  ||||||| || | || || |||||||||  ||||  |||||||||  ||||| |||||||||    
T  21844920 tttggaggtgcccttttgagcacgggtccttatttcagctgagttaaatcaagcagacttcacttttctcacaggcttcttctaatttttctctgcctta 21845019  T
Q  373 gttctctctgacagacttggatagtgctgctcaaa 407  Q
     | |||||  | || ||||||||||||||||||||    
T  21845020 atgctctcatataggcttggatagtgctgctcaaa 21845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 181; Significance: 2e-97; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 106 - 362
Target Start/End: Original strand, 8413679 - 8413935
Alignment:
Q  106 ttatatcacagagaactataacaaggaaagcttgtgcaaatcctgaattaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcag 205  Q
    ||||||||| |||| |||||||||| ||  |||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8413679 ttatatcacggagatctataacaagaaagacttgtgcaaatcgtgaatgaaataaactaacaatgatactgctaaaagaagaacaacagagaaatggcag 8413778  T
Q  206 aagctactagcttaacacccagattcacaaagatttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcat 305  Q
    ||||||||||||||||| |||  |||||||||||||||||||||||||| |||||||||| | ||||||||||||||||||||||| || ||||||||||    
T  8413779 aagctactagcttaacaaccatgttcacaaagatttgaaccaactattcagtatatggcaggacagctttggaggtacccttttgagcacgggtcctcat 8413878  T
Q  306 tccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgcttttt 362  Q
    ||||  ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8413879 tccggttgagttgaagctagtaggcttcactttgttcgcctgcttcttctgcttttt 8413935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 240 - 403
Target Start/End: Original strand, 14296254 - 14296417
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||||||||  |||| || ||||||| ||||||||||||||||||| ||| | || ||||||||| ||||||| |||||||||||||||| ||||    
T  14296254 ttgaaccaactattatgtatctgccaaggcatctttggaggtacccttttggacacgagtgctcattccggctgagttaaagctagtaggcttcattttg 14296353  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgct 403  Q
    |||| ||||||||||| |||| | ||| ||||||| ||||| || |||||||||||||||||||    
T  14296354 ttcatctgcttcttcttctttctctctaccttagtactctcagatagacttggatagtgctgct 14296417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 243 - 408
Target Start/End: Original strand, 18811704 - 18811869
Alignment:
Q  243 aaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttc 342  Q
    |||||||||||| |||| || ||||| |||||||||||  ||||||||  || |||||||||||||| ||||||| ||||||  | |||||||||| | |    
T  18811704 aaccaactattctgtatctgtcaaggtagctttggaggagcccttttgggcacgggtcctcattccggctgagttaaagctataaagcttcactttatgc 18811803  T
Q  343 acctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaa 408  Q
    ||||||||||||| |||| | ||||||||| | |||||  | | ||||||||||||||||||||||    
T  18811804 acctgcttcttcttctttctctctgccttattgctctcaaataaacttggatagtgctgctcaaaa 18811869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 31092436 - 31092283
Alignment:
Q  244 accaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttca 343  Q
    ||||||||||| |||| ||||||| |  |||||||||||||||||||  || | |||||||||||| ||||||| || |||| |||| ||||||| ||||    
T  31092436 accaactattctgtatctggcaagacgactttggaggtacccttttgggcacgagtcctcattccggctgagttaaatctagaaggcatcactttattca 31092337  T
Q  344 cctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    | || ||||||| |||| | |||| |||||| ||||| || |||||||||||||    
T  31092336 cgtgattcttcttctttctctctgtcttagtgctctcagatagacttggatagt 31092283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 241 - 397
Target Start/End: Complemental strand, 37344742 - 37344586
Alignment:
Q  241 tgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||| ||||||||  ||||||| |||||| ||||||||| ||||||||||  || |  ||||||||||| ||||||| || |||| | | ||||||||||    
T  37344742 tgaatcaactattatgtatatgtcaaggcggctttggagatacccttttgggcacgaatcctcattccggctgagttaaaactagaatgattcactttgt 37344643  T
Q  341 tcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    ||||||| ||||||| |||| | ||||||||||| || ||  | |||||||||||||    
T  37344642 tcacctgtttcttcttctttctctctgccttagtgctttcaaatagacttggatagt 37344586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 240 - 407
Target Start/End: Complemental strand, 18693225 - 18693061
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||||||||  |||| || |||| || ||||||||| ||||||||   ||  ||||||||||||| || |||| ||||||| || ||||||||||    
T  18693225 ttgaaccaactattttgtatctgtcaagacaactttggaggaacccttttaggcacaggtcctcattccggcttagttaaagctagcagacttcactttg 18693126  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    ||  |  |||||||   |||||| ||||||||||| |||||  | ||  |||||||||||||| ||||    
T  18693125 tttgcacgcttctt---ctttttctctgccttagtgctctcataaaggtttggatagtgctgcacaaa 18693061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 13502777 - 13502653
Alignment:
Q  269 cagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgc 368  Q
    ||||||||||| ||| ||||||  || ||  |||||||| | ||||||| ||||||| || | |  ||||||||||  ||||||||| |||||| |||||    
T  13502777 cagctttggagttactcttttgggcacggaccctcattctggctgagttaaagctagcagaccttcctttgttcacgagcttcttcttctttttctctgc 13502678  T
Q  369 cttagttctctctgacagacttgga 393  Q
    |||||| ||||| || |||||||||    
T  13502677 cttagtgctctccgaaagacttgga 13502653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 3e-62; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 242 - 447
Target Start/End: Original strand, 50903480 - 50903685
Alignment:
Q  242 gaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgtt 341  Q
    |||||||||| |||||||||| |||| | ||||||||||||||  ||||  || ||||||||||| || |||||||||||||||||||||||||||||||    
T  50903480 gaaccaactaatcggtatatgccaagtcggctttggaggtaccgctttgggcacgggtcctcatttcggctgagttgaagctagtaggcttcactttgtt 50903579  T
Q  342 cacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcc 441  Q
    |||||||||||||||||||   ||||||||||| ||||||||||||||||||||||| |||| |||  |||||| ||||||||||||| |||||||||||    
T  50903580 cacctgcttcttctgctttcactctgccttagtgctctctgacagacttggatagtgttgctgaaatattgatgggatggcttcatcattgtcctcttcc 50903679  T
Q  442 tcaact 447  Q
    ||||||    
T  50903680 tcaact 50903685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 240 - 447
Target Start/End: Original strand, 49491876 - 49492082
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||||||||||||||| | ||||||| |||||||||||||||||||  || |||||||||||||| |||||||||||||||||||| ||||||||    
T  49491876 ttgaaccaactattcggtatacgccaaggcaactttggaggtacccttttgggcacgggtcctcattccggctgagttgaagctagtaggc-tcactttg 49491974  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctctt 439  Q
    ||||| ||||||||||||||| |  |||||||||| |||||| |||||||||||||||| ||||| ||  ||||||||||||||| |||| |||||||||    
T  49491975 ttcacatgcttcttctgctttctccctgccttagtgctctctaacagacttggatagtgttgctcgaagattgatgtgatggctttatcattgtcctctt 49492074  T
Q  440 cctcaact 447  Q
    ||| ||||    
T  49492075 ccttaact 49492082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 263 - 441
Target Start/End: Original strand, 17114733 - 17114911
Alignment:
Q  263 gcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgcttttt 362  Q
    ||||||| |||||||||||||||||||| |||||||||||||||| | | ||||| ||||||| |||||||||||||||||| || ||||||| |||| |    
T  17114733 gcaaggccgctttggaggtacccttttggacatgggtcctcattctggcagagttaaagctagcaggcttcactttgttcacatgtttcttcttctttct 17114832  T
Q  363 atctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcc 441  Q
     |||| |||||| ||||| || ||||||| |||||| || |||||   |||| |||||||||||||| |||| ||||||    
T  17114833 ctctgtcttagtgctctcagatagacttgcatagtgttggtcaaagtctgatatgatggcttcatcattgtcttcttcc 17114911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 244 - 393
Target Start/End: Original strand, 13061962 - 13062111
Alignment:
Q  244 accaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttca 343  Q
    ||||| ||||| |||| || |||||| ||||||||||||| ||||| | || ||||||||||| || ||||||| ||||||  |||| ||||||||||||    
T  13061962 accaattattctgtatttgtcaaggcggctttggaggtactcttttcagcacgggtcctcatttcggctgagttaaagctaaaaggcatcactttgttca 13062061  T
Q  344 cctgcttcttctgctttttatctgccttagttctctctgacagacttgga 393  Q
    |||||||||||| |||||| |||| |||||| ||||| || |||||||||    
T  13062062 cctgcttcttcttctttttctctgtcttagtgctctcagatagacttgga 13062111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 243 - 407
Target Start/End: Original strand, 41035024 - 41035188
Alignment:
Q  243 aaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttc 342  Q
    |||||||||||| | || || ||||| |||||||||||  || |||||  || |||||||||||||| ||||||| ||||||| ||||||||   | |||    
T  41035024 aaccaactattcagaatttgccaaggtagctttggaggagcctttttgggcacgggtcctcattccggctgagttaaagctagaaggcttcaaaatattc 41035123  T
Q  343 acctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    ||||||||||||| |||||| ||||||||| | ||||| || |||||||||||||| || |||||    
T  41035124 acctgcttcttcttctttttctctgccttattgctctcagatagacttggatagtgttgttcaaa 41035188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 273 - 440
Target Start/End: Original strand, 19394156 - 19394323
Alignment:
Q  273 tttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcctta 372  Q
    |||| |||||||||||||  || |||||||||||||  || |||| |||| || ||||||||||||| |||| |||||||||| |||||| ||||| |||    
T  19394156 tttgaaggtacccttttgggcacgggtcctcattccagctaagttaaagcaagaaggcttcactttgctcacatgcttcttcttctttttctctgcttta 19394255  T
Q  373 gttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttc 440  Q
    || ||||| || || ||||||||||||||||||||   ||||   |||||||||||  ||||||||||    
T  19394256 gtgctctccgataggcttggatagtgctgctcaaagtctgatacaatggcttcatcgttgtcctcttc 19394323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 110 - 238
Target Start/End: Original strand, 49491646 - 49491774
Alignment:
Q  110 atcacagagaactataacaaggaaagcttgtgcaaatcctgaattaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagc 209  Q
    |||||| ||| |||||| |||||| ||||||||||||||| ||| || |||| |||||| | | |||||||||||| |||||| | ||||||||||||||    
T  49491646 atcacaaagatctataataaggaaggcttgtgcaaatcctcaatgaattaaaataacaaagcagctgctaaaagaacaacaacggggaaatggcagaagc 49491745  T
Q  210 tactagcttaacacccagattcacaaaga 238  Q
    ||||  || ||||||||| ||||||||||    
T  49491746 tactgactaaacacccaggttcacaaaga 49491774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 362
Target Start/End: Complemental strand, 3374424 - 3374305
Alignment:
Q  243 aaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttc 342  Q
    |||||||||||| |||  |  |||||||||||||||| ||||||||||  ||   |||||||||||| ||||||| || ||||  |||||||||||||||    
T  3374424 aaccaactattctgtagcttccaaggcagctttggagctacccttttgggcacatgtcctcattccggctgagttaaatctagccggcttcactttgttc 3374325  T
Q  343 acctgcttcttctgcttttt 362  Q
    || |||||||||| ||||||    
T  3374324 acttgcttcttcttcttttt 3374305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 122 - 239
Target Start/End: Original strand, 34566070 - 34566187
Alignment:
Q  122 tataacaaggaaagcttgtgcaaatcctgaattaaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagctactagcttaac 221  Q
    |||||||||||| |||||||||||| || ||  || ||||||||||| | ||||| |||||||| |||| || ||||||| || ||||||||| || |||    
T  34566070 tataacaaggaaggcttgtgcaaattctcaacgaattaaactaacaaagcaactgataaaagaacaacaccaaagaaatgacataagctactatctaaac 34566169  T
Q  222 acccagattcacaaagat 239  Q
    ||| || |||||||||||    
T  34566170 accaaggttcacaaagat 34566187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 272 - 347
Target Start/End: Complemental strand, 14344147 - 14344072
Alignment:
Q  272 ctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctg 347  Q
    ||||||||||||||||||| ||| | ||| ||||||||| |||||| || |||| |||||||||||||||||||||    
T  14344147 ctttggaggtacccttttggacacgagtcatcattccgattgagttaaaactagaaggcttcactttgttcacctg 14344072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 265 - 340
Target Start/End: Original strand, 34566268 - 34566343
Alignment:
Q  265 aaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||| |||||||| | ||||||||| |||| | |||||||||||  |||||||||||||||||| |||||||||||    
T  34566268 aaggaagctttggggatacccttttaaacacgagtcctcattccagctgagttgaagctagtagacttcactttgt 34566343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 155 - 236
Target Start/End: Original strand, 50903291 - 50903369
Alignment:
Q  155 aaataaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagctactagcttaacacccagattcacaaa 236  Q
    ||||||||||||||   |||||||||||||| |||||   ||||| ||||||||||||||||| ||||||| | ||||||||    
T  50903291 aaataaactaacaaaacaactgctaaaagaacaacaa---agaaaaggcagaagctactagctaaacacccgggttcacaaa 50903369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 273 - 339
Target Start/End: Complemental strand, 39332425 - 39332359
Alignment:
Q  273 tttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    |||| |||||||||||||  || ||||||||||| || ||||||| |||| || |||||||||||||    
T  39332425 tttgaaggtacccttttgggcacgggtcctcatttcggctgagttaaagcaagcaggcttcactttg 39332359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 117; Significance: 3e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 240 - 447
Target Start/End: Original strand, 26449532 - 26449737
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    |||||||||||||| |||||||| | |||||| |||||||||||||||||| ||| | |||||||||||| ||||| |||||||||||||||||||| ||    
T  26449532 ttgaaccaactatttggtatatgtcgaggcagttttggaggtacccttttggacacgagtcctcattccggctgagctgaagctagtaggcttcactctg 26449631  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctctt 439  Q
    ||||||||||||||||||||| | ||||||||||| |||||||||| ||| |||||||| |||||| |  ||||||||||| |||||| | |||||||||    
T  26449632 ttcacctgcttcttctgctttctctctgccttagtgctctctgacaaactaggatagtgttgctcaga--ttgatgtgatgacttcattattgtcctctt 26449729  T
Q  440 cctcaact 447  Q
    ||||||||    
T  26449730 cctcaact 26449737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 271 - 355
Target Start/End: Original strand, 19407870 - 19407954
Alignment:
Q  271 gctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttct 355  Q
    ||||||||||||||||||||  || |||||||||||||| ||||||| ||||||| |||  ||||||||||||||||||||||||    
T  19407870 gctttggaggtacccttttgggcacgggtcctcattccggctgagttaaagctagaaggaatcactttgttcacctgcttcttct 19407954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 158 - 226
Target Start/End: Original strand, 26449380 - 26449448
Alignment:
Q  158 taaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagctactagcttaacaccca 226  Q
    ||||||||||| | ||||| |||||||| ||||| ||||||||| ||||||||||||||| ||||||||    
T  26449380 taaactaacaaagcaactgttaaaagaacaacaatagagaaatgacagaagctactagctaaacaccca 26449448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 273 - 407
Target Start/End: Complemental strand, 33191369 - 33191235
Alignment:
Q  273 tttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcctta 372  Q
    |||| |||||||||| ||  || ||||||||||  |  ||||||| ||||||| ||||||||||||| |||| || ||||||| | |||| ||||| |||    
T  33191369 tttgaaggtacccttctgggcacgggtcctcatgtcagctgagttaaagctagcaggcttcactttgctcacatgtttcttcttcattttctctgcttta 33191270  T
Q  373 gttctctctgacagacttggatagtgctgctcaaa 407  Q
    || ||| | || ||  |||||||||||||||||||    
T  33191269 gtgctccccgataggtttggatagtgctgctcaaa 33191235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 2e-51; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 444 - 559
Target Start/End: Original strand, 17247791 - 17247906
Alignment:
Q  444 aactaatgaagagaaaagaaaatagagcacggtggcgaagcaacctaatccagagagaaagaccaccacccaagaaaccatgagaaagcagctaaggtag 543  Q
    ||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17247791 aactaatgaagagaaaagaaaatagagcacggtgaagaagcaacataatccagagagaaagaccaccacccaagaaaccatgagaaagcagctaaggtag 17247890  T
Q  544 ttggtcttctggattt 559  Q
    ||||||||||||||||    
T  17247891 ttggtcttctggattt 17247906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 240 - 397
Target Start/End: Complemental strand, 25167967 - 25167810
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||||||||| |||| || |||||| ||||||||||||||||||||  |||| |||||| ||||| ||||||| || |||| |||||||||||||    
T  25167967 ttgaaccaactattctgtatctgtcaaggcggctttggaggtacccttttgggcatgagtcctctttccggctgagttaaaactagaaggcttcactttg 25167868  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    ||||| || ||||||| |||| | ||||||||||| || || || |||||||||||||    
T  25167867 ttcacatgtttcttcttctttctctctgccttagtgctttcagatagacttggatagt 25167810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 240 - 441
Target Start/End: Original strand, 4263365 - 4263563
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||||||||| |||| || |||| ||  |||||||| |||||||||| || |||||||||||||| ||||||| || |||| |||||||| ||||    
T  4263365 ttgaaccaactattccgtatctgccaagacaattttggaggaacccttttgagcacgggtcctcattccggctgagttaaaactagcaggcttcattttg 4263464  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctctt 439  Q
    || || ||||||||   |||||| ||||||||||| ||||  || ||  ||||||||||| |||||||   ||||  |||||| ||| ||| ||||||||    
T  4263465 tttacatgcttctt---ctttttctctgccttagtgctcttagaaaggtttggatagtgccgctcaaagtctgatacgatggcatcaacaccgtcctctt 4263561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 241 - 407
Target Start/End: Complemental strand, 10990147 - 10989981
Alignment:
Q  241 tgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||||||||||||  |||| ||  | |||||||||||||| |||||||||  || | ||||||||| || || |||| ||||||| ||| ||||||||||    
T  10990147 tgaaccaactattttgtatctgttagggcagctttggaggaacccttttgtgcacgagtcctcatttcggctaagttaaagctagaaggattcactttgt 10990048  T
Q  341 tcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    || | |||| ||||| |||| |  |||||||||| ||||| ||   || ||||||||||||||||||    
T  10990047 tctcttgctgcttcttctttctcgctgccttagtgctctcagatttacatggatagtgctgctcaaa 10989981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 240 - 375
Target Start/End: Complemental strand, 3949458 - 3949323
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||| ||||||||| | || || |||||| ||||||||||||||||| |||||| | |||||||||| | || |||| || |||  | ||||||||||     
T  3949458 ttgaatcaactattctgcatctgtcaaggcggctttggaggtacccttctgaacacgagtcctcattctggctcagttaaaactaaaaagcttcacttta 3949359  T
Q  340 ttcacctgcttcttctgctttttatctgccttagtt 375  Q
    |||||||| ||||||| ||||   ||||||||||||    
T  3949358 ttcacctgtttcttcttctttccctctgccttagtt 3949323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 8e-32; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 241 - 407
Target Start/End: Original strand, 16832137 - 16832303
Alignment:
Q  241 tgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||||| ||||||  |||| || |||| |||||||||||| ||||||||||||| | ||||||||||| |||||||| ||| ||||||||||||||||||    
T  16832137 tgaaccgactattatgtatctgccaagacagctttggaggcacccttttgaacacgtgtcctcattccaactgagttaaagttagtaggcttcactttgt 16832236  T
Q  341 tcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    |||| |||||||| | | || | ||||||||||||||||  || ||| ||||| | |||||||||||    
T  16832237 tcacatgcttcttattccttctctctgccttagttctctaagaaagagttggacaatgctgctcaaa 16832303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 240 - 407
Target Start/End: Original strand, 24239839 - 24240003
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    |||| |||||||||  |||| || ||||  |||||| ||||||||||||||  || |||||||||||||| ||||||| ||||||||||||||||||||     
T  24239839 ttgagccaactattatgtatctgccaagatagcttttgaggtacccttttgggcacgggtcctcattccggctgagttaaagctagtaggcttcacttta 24239938  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    ||||||| ||||||   |||| |   ||||||||| ||||| || |||||||||||||||||||||||    
T  24239939 ttcacctacttctt---ctttctcgatgccttagtgctctcagatagacttggatagtgctgctcaaa 24240003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 240 - 397
Target Start/End: Complemental strand, 37050125 - 37049967
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagta-ggcttcacttt 338  Q
    ||||||||||||||  |||| |  ||| || ||||||||||||||||||||  || | |||||||||||| ||||||| || |||| | |||||||||||    
T  37050125 ttgaaccaactattttgtatctctcaaagcggctttggaggtacccttttgggcacgagtcctcattccggctgagttaaaactagaaaggcttcacttt 37050026  T
Q  339 gttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    |||||| || ||||||| |||||| ||||||||||| || || || |||||||||||||    
T  37050025 gttcacatgtttcttcttctttttctctgccttagtgctttcagatagacttggatagt 37049967  T

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Target: chr4; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 366 - 447
Target Start/End: Original strand, 12579947 - 12580028
Alignment:
Q  366 tgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcctcaact 447  Q
    ||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  12579947 tgccttattgctctctgatagacttggatagtgctgctcaaaggttgatgtgatggcttcattaatgtcctcttcctcaact 12580028  T

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Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 272 - 441
Target Start/End: Complemental strand, 19852576 - 19852407
Alignment:
Q  272 ctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcctt 371  Q
    |||||||| ||| ||||||  || |||| |||||||||  |||||| || |||| |||| ||||||||| ||| |||||||||| |||||| ||||||||    
T  19852576 ctttggagttactcttttgggcacgggttctcattccgggtgagttaaaactagcaggcctcactttgtgcacgtgcttcttcttctttttctctgcctt 19852477  T
Q  372 agttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcc 441  Q
    ||| ||||| || ||||||||||| || | ||||||    ||| ||| ||||||| || |||||||||||    
T  19852476 agtgctctccgatagacttggataatgtttctcaaagtcagatatgagggcttcaacattgtcctcttcc 19852407  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 441
Target Start/End: Original strand, 16593766 - 16593966
Alignment:
Q  241 tgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||||||||||||  |||  || |||| || |||||| | ||| ||||||  || |||| ||||||||| || |||| || |||| |||| |||||||||    
T  16593766 tgaaccaactattatgtagctgccaagacaactttggcgttactcttttgggcacgggttctcattccggctaagttaaaactagcaggcctcactttgt 16593865  T
Q  341 tcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttc 440  Q
     ||| ||||||| || |||||| ||||||||||| ||||| || ||||||||||| || | ||||||    ||| ||| ||||||| || ||||||||||    
T  16593866 gcacgtgcttctacttctttttctctgccttagtgctctccgatagacttggataatgtttctcaaagtcagatatgagggcttcaacattgtcctcttc 16593965  T
Q  441 c 441  Q
    |    
T  16593966 c 16593966  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 227
Target Start/End: Complemental strand, 9241725 - 9241671
Alignment:
Q  172 aactgctaaaagaagaacaacagagaaatggcagaagctactagcttaacacccag 227  Q
    |||||||||||||| ||||| || ||||||| |||||||||||||| |||||||||    
T  9241725 aactgctaaaagaacaacaa-agggaaatggaagaagctactagctaaacacccag 9241671  T

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Target: chr8 (Bit Score: 69; Significance: 1e-30; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 239 - 407
Target Start/End: Original strand, 27786782 - 27786950
Alignment:
Q  239 tttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcacttt 338  Q
    |||||||||||||||  |||| || ||||| ||||||||||| ||| |||||  || || ||||||||||| ||||||| ||||||| ||||||||||||    
T  27786782 tttgaaccaactattttgtatctgtcaaggtagctttggaggaaccattttgggcacggctcctcattccggctgagttaaagctagaaggcttcacttt 27786881  T
Q  339 gttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
     |||| |||||| |||| |||| | || |||||| | ||||| || |||||||||||||||||||||||    
T  27786882 attcatctgcttattcttctttctctccgccttattgctctcagatagacttggatagtgctgctcaaa 27786950  T

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Target: chr8; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 272 - 441
Target Start/End: Original strand, 8831250 - 8831419
Alignment:
Q  272 ctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcctt 371  Q
    |||||||| ||| ||||||| || |||||||||||||| ||||||| ||||||| |||| ||||||||||||  |||||||||| || ||| ||||||||    
T  8831250 ctttggagttacacttttgagcacgggtcctcattccggctgagttaaagctagcaggcctcactttgttcatgtgcttcttcttctctttctctgcctt 8831349  T
Q  372 agttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcc 441  Q
    ||| ||||| || ||||||||||| || ||||||||   |||| ||| | ||||| || |||||||||||    
T  8831350 agtgctctcagatagacttggataatgttgctcaaagtctgatatgaggtcttcaacattgtcctcttcc 8831419  T

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Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 264 - 407
Target Start/End: Original strand, 36206440 - 36206583
Alignment:
Q  264 caaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgcttttta 363  Q
    ||||||| ||||||||| || |||||   || | ||||||||||||||| |||| ||||||| |||||||||||| ||||  |||||||||| |||| |     
T  36206440 caaggcaactttggaggaactcttttaggcacgagtcctcattccgactaagttaaagctagaaggcttcactttattcatttgcttcttcttctttctc 36206539  T
Q  364 tctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    |||||||| || ||||| || ||||||||| |||| ||||||||    
T  36206540 tctgccttggtgctctcagatagacttggaaagtgttgctcaaa 36206583  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 29369223 - 29369070
Alignment:
Q  244 accaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttca 343  Q
    ||||||||||| |||| || |||||| | |||||| ||| |||||||  || |||||||||||| | || |||| ||||| | |||| ||||||| ||||    
T  29369223 accaactattctgtatctgccaaggcggatttggatgtatccttttgggcacgggtcctcattctggctcagttaaagcttgaaggcatcactttattca 29369124  T
Q  344 cctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    | |||||||||| |||| | | || |||||| ||||| || |||||||||||||    
T  29369123 cgtgcttcttcttctttatctttgtcttagtgctctcagatagacttggatagt 29369070  T

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Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 302 - 440
Target Start/End: Original strand, 399778 - 399916
Alignment:
Q  302 tcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctg 401  Q
    ||||||||||||| || ||||||| |  | ||||||||||||| || ||||||| |||| | ||||||||||| |||||  | | ||| |||||||| ||    
T  399778 tcattccgactgaattaaagctagcaaacctcactttgttcacatgtttcttcttctttctctctgccttagtgctctcatataaactcggatagtgttg 399877  T
Q  402 ctcaaaagttgatgtgatggcttcatcactgtcctcttc 440  Q
    ||||||  ||||| |||  ||||||||| ||||||||||    
T  399878 ctcaaagtttgatatgagtgcttcatcattgtcctcttc 399916  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 270 - 441
Target Start/End: Original strand, 28225739 - 28225910
Alignment:
Q  270 agctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgcc 369  Q
    |||||| |||||| ||||||| |||   |||||||||||| ||||||| ||| ||  |  |||||||||| |||| ||||||||||  | | | ||| ||    
T  28225739 agcttttgaggtatccttttggacacatgtcctcattccggctgagttaaagttaacaaacttcactttgatcacatgcttcttcttttctctctctacc 28225838  T
Q  370 ttagttctctctgacagacttggatagtgctgctcaaaagttgatgtgatggcttcatcactgtcctcttcc 441  Q
    ||||| ||||| || ||||||||||| || || |||||   |||  || |||||||| || |||||||||||    
T  28225839 ttagtgctctcagatagacttggataatgttgttcaaagcatgaaatgttggcttcaacattgtcctcttcc 28225910  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 239 - 405
Target Start/End: Complemental strand, 36868417 - 36868251
Alignment:
Q  239 tttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcacttt 338  Q
    |||||||||||||||  |||| || ||||| ||||||||||| ||||||||| ||| ||| |||||||||| ||||||| ||||||| ||||||||||||    
T  36868417 tttgaaccaactattatgtatctgtcaaggtagctttggaggaacccttttggacacgggccctcattccggctgagttaaagctagaaggcttcacttt 36868318  T
Q  339 gttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctca 405  Q
     ||||| |||||||||| |||| | ||  ||||| | ||||| ||   |||||||||||||| ||||    
T  36868317 attcacttgcttcttcttctttctctccaccttattgctctcagattaacttggatagtgctactca 36868251  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 240 - 397
Target Start/End: Original strand, 788271 - 788428
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttg 339  Q
    ||||||||| |||||  |||||| |||||| |||||||||| |||||||||  || | ||||||||  || ||||||| ||| ||| |||||||| ||||    
T  788271 ttgaaccaattattctatatatgtcaaggcggctttggaggaacccttttgggcacgagtcctcatagcgtctgagttaaagttagaaggcttcattttg 788370  T
Q  340 ttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    |||| ||||||||||| |||| | ||||||||| | |||||  | |||||||||||||    
T  788371 ttcatctgcttcttcttctttctctctgccttaatgctctcaaatagacttggatagt 788428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 244 - 397
Target Start/End: Complemental strand, 19215502 - 19215349
Alignment:
Q  244 accaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgttca 343  Q
    ||||||||||| |||| || |||||||| |||| |||||||||||||  |  |||||||||||| | ||||||| |||||||  ||| ||||||||||||    
T  19215502 accaactattctgtatctgccaaggcagttttgaaggtacccttttgggctcgggtcctcattcgggctgagttaaagctagacggcatcactttgttca 19215403  T
Q  344 cctgcttcttctgctttttatctgccttagttctctctgacagacttggatagt 397  Q
    |||||||||||| | || | |||| |||||| |||||  | || ||||||||||    
T  19215402 cctgcttcttcttcattctctctgtcttagtgctctcaaataggcttggatagt 19215349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 36150489 - 36150555
Alignment:
Q  158 taaactaacaatgaaactgctaaaagaagaacaacagagaaatggcagaagctactagcttaacacc 224  Q
    ||||||||||| | ||||||||||| || ||||||||||||||| ||||||||||||||| ||||||    
T  36150489 taaactaacaaagcaactgctaaaacaacaacaacagagaaatgacagaagctactagctaaacacc 36150555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 334 - 407
Target Start/End: Original strand, 37307257 - 37307330
Alignment:
Q  334 actttgttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggatagtgctgctcaaa 407  Q
    ||||||||||| |||||||||| |||| | ||| ||||||| ||||| ||||||||| ||||||||| ||||||    
T  37307257 actttgttcacatgcttcttcttctttctctctaccttagtgctctcagacagacttagatagtgctactcaaa 37307330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 240 - 320
Target Start/End: Original strand, 36150641 - 36150721
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaa 320  Q
    |||| ||||||||| |||||||| | ||| ||||||||||||| |||||||  || | |||||||||||| ||||||||||    
T  36150641 ttgagccaactatttggtatatgccgaggtagctttggaggtatccttttgggcacgagtcctcattccggctgagttgaa 36150721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 296 - 407
Target Start/End: Complemental strand, 15188131 - 15188023
Alignment:
Q  296 gggtcctcattccgactgagttgaagctagtaggcttcactttgttcacctgcttcttctgctttttatctgccttagttctctctgacagacttggata 395  Q
    ||||||||||||   ||||||| ||||||  ||||||||||||| |||  ||||||||||   |||| ||||| ||||| |||||  | || ||||||||    
T  15188131 gggtcctcattctagctgagttaaagctatcaggcttcactttgctcatatgcttcttct---ttttctctgcattagtgctctcatataggcttggata 15188035  T
Q  396 gtgctgctcaaa 407  Q
    ||||||||||||    
T  15188034 gtgctgctcaaa 15188023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 32278702 - 32278752
Alignment:
Q  240 ttgaaccaactattcggtatatggcaaggcagctttggaggtacccttttg 290  Q
    ||||||| ||||||| |||| || |||||| ||||||||||||||||||||    
T  32278702 ttgaacccactattctgtatctgtcaaggcggctttggaggtacccttttg 32278752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 241 - 395
Target Start/End: Complemental strand, 10382 - 10228
Alignment:
Q  241 tgaaccaactattcggtatatggcaaggcagctttggaggtacccttttgaacatgggtcctcattccgactgagttgaagctagtaggcttcactttgt 340  Q
    |||||||||||||  |||  || |||| ||||||||||| ||| |||||   || |||||||||||||| ||||||| || |||| |||| |||||||||    
T  10382 tgaaccaactattatgtagctgccaagacagctttggagttactcttttaggcacgggtcctcattccggctgagttaaaactagcaggcctcactttgt 10283  T
Q  341 tcacctgcttcttctgctttttatctgccttagttctctctgacagacttggata 395  Q
     ||| |||||||||| |||||| ||||||||||| ||||| || |||||||||||    
T  10282 gcacgtgcttcttcttctttttctctgccttagtgctctccgatagacttggata 10228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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