View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_high_48 (Length: 293)

Name: NF13864_high_48
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_high_48
NF13864_high_48
[»] chr5 (3 HSPs)
chr5 (29-227)||(27265729-27265927)
chr5 (219-279)||(27261324-27261384)
chr5 (96-160)||(12124095-12124159)
[»] chr7 (2 HSPs)
chr7 (92-160)||(35479038-35479106)
chr7 (57-156)||(24578442-24578544)
[»] chr4 (2 HSPs)
chr4 (94-158)||(3797255-3797321)
chr4 (94-158)||(4216380-4216446)
[»] chr6 (1 HSPs)
chr6 (94-160)||(9367628-9367694)
[»] chr2 (2 HSPs)
chr2 (33-162)||(6811443-6811572)
chr2 (94-162)||(38871290-38871358)
[»] chr1 (2 HSPs)
chr1 (92-160)||(20619978-20620045)
chr1 (67-115)||(19030839-19030887)
[»] chr3 (3 HSPs)
chr3 (67-156)||(45294775-45294867)
chr3 (123-160)||(13750714-13750751)
chr3 (67-111)||(13423269-13423313)


Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 29 - 227
Target Start/End: Complemental strand, 27265927 - 27265729
Alignment:
Q  29 gcattatatataatatgtgtttaattctttaatgattgacatttcaactaatcatcccaatgatctatgctacaatcatcaagtccaaggctatcaactt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  27265927 gcattatatataatatgtgtttaattctttaatgattgacatttcaactaatcatcccaatggtccatgctacaatcatcaagtccaaggctatcaactt 27265828  T
Q  129 caatcttaactccatcttcaaccttcttatcatccgtaacatagtcttgagaatcaaaggtttccacaatgaccacgtcatcatctcctattatttcat 227  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27265827 caatcttaactccatcttcaaccttcttatcatcactaacatagtcttgagaatcaaaggtttccacaatgaccacgtcatcatctcctattatttcat 27265729  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 27261384 - 27261324
Alignment:
Q  219 ttatttcattaaatgccatccgactgagttcattataaacaatcatcatatggatacatct 279  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  27261384 ttatttcattaaatgccacccgactaagttcattataaacaatcatcatatggatacatct 27261324  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 12124159 - 12124095
Alignment:
Q  96 tgctacaatcatcaagtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca 160  Q
    ||||||||| ||||| |||||| |||||||||| || ||| |||||||||||||| |||||||||    
T  12124159 tgctacaataatcaattccaagactatcaacttaaacctttactccatcttcaacattcttatca 12124095  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 35479038 - 35479106
Alignment:
Q  92 tctatgctacaatcatcaagtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca 160  Q
    |||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  35479038 tctaagctacaatcatcaagtccaaggctatcaacttgaatcttgactccatcttcagccttcttatca 35479106  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 24578442 - 24578544
Alignment:
Q  57 ttaatgattgacatttcaactaatcatcccaatgatctatgctacaatcatcaagtccaaggctatcaac---ttcaatcttaactccatcttcaacctt 153  Q
    ||||||||  ||||||||||||||   ||||| | ||||||||||||||||||||||||||| | ||| |   ||||||||| ||||||||| |||||||    
T  24578442 ttaatgatatacatttcaactaatttgcccaaaggtctatgctacaatcatcaagtccaaggttttcatctttttcaatcttgactccatctccaacctt 24578541  T
Q  154 ctt 156  Q
    |||    
T  24578542 ctt 24578544  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 3797321 - 3797255
Alignment:
Q  94 tatgctacaatcatcaagtccaaggctatca--acttcaatcttaactccatcttcaaccttcttat 158  Q
    ||||||||||||||||||||||||||| |||  | ||||||||| ||||||| | ||||||||||||    
T  3797321 tatgctacaatcatcaagtccaaggctttcatcatttcaatcttgactccatatccaaccttcttat 3797255  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 4216446 - 4216380
Alignment:
Q  94 tatgctacaatcatcaagtccaaggctatca--acttcaatcttaactccatcttcaaccttcttat 158  Q
    ||||||||||||||||||||||||||| |||  | ||||||||| ||||||| | ||||||||||||    
T  4216446 tatgctacaatcatcaagtccaaggctttcatcatttcaatcttgactccatatccaaccttcttat 4216380  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 9367628 - 9367694
Alignment:
Q  94 tatgctacaatcatcaagtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca 160  Q
    |||||||||||||||||||  || | | ||| |||||||||| ||||||||| ||||||||||||||    
T  9367628 tatgctacaatcatcaagtataaagttttcatcttcaatcttgactccatctccaaccttcttatca 9367694  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 162
Target Start/End: Original strand, 6811443 - 6811572
Alignment:
Q  33 tatatataatatgtgtttaattctttaatgattgacatttcaactaatcatcc-caatgatctatgctacaatcatcaagtccaaggctatcaacttcaa 131  Q
    ||||||||||||||||||| ||  ||||||||  |||||| || |||||  || ||| | ||||| |||||||||| || | |||| |||||||||||||    
T  6811443 tatatataatatgtgtttagtttcttaatgatatacatttgaattaatccgcctcaaag-tctatactacaatcattaatttcaagactatcaacttcaa 6811541  T
Q  132 tcttaactccatcttcaaccttcttatcatc 162  Q
      || |||||||||| ||| |||||||||||    
T  6811542 cttttactccatcttgaacattcttatcatc 6811572  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 38871358 - 38871290
Alignment:
Q  94 tatgctacaatcatcaagtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatcatc 162  Q
    |||| |||||||||||| |  ||||||  || |||||||||| |||| ||||||| |||||||||||||    
T  38871358 tatgttacaatcatcaattgaaaggctgccatcttcaatctttactctatcttcagccttcttatcatc 38871290  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 20620045 - 20619978
Alignment:
Q  92 tctatgctacaatcatcaagtccaaggctatcaacttcaatcttaactccatcttcaaccttcttatca 160  Q
    ||||||||||||||||||||| |||| || ||| |||||||||| ||| ||| |||||| |||||||||    
T  20620045 tctatgctacaatcatcaagttcaagactttcatcttcaatcttgacttcat-ttcaacattcttatca 20619978  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 115
Target Start/End: Complemental strand, 19030887 - 19030839
Alignment:
Q  67 acatttcaactaatcatcccaatgatctatgctacaatcatcaagtcca 115  Q
    |||||||||||||||  |||||  || ||||||||||||||||||||||    
T  19030887 acatttcaactaatctacccaaatatttatgctacaatcatcaagtcca 19030839  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 45294775 - 45294867
Alignment:
Q  67 acatttcaactaatcatcccaatgatctatgctacaatcatcaagtccaaggctatcaac---ttcaatcttaactccatcttcaaccttctt 156  Q
    |||||||||||||||  ||  | ||||||| ||||||||||||||| | ||||| ||| |   ||||||||| |||||||||||||| |||||    
T  45294775 acatttcaactaatccgccataagatctatactacaatcatcaagttccaggctttcatcctattcaatcttgactccatcttcaacattctt 45294867  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 13750751 - 13750714
Alignment:
Q  123 caacttcaatcttaactccatcttcaaccttcttatca 160  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  13750751 caacttcaatcttgattccatcttcaaccttcttatca 13750714  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 13423269 - 13423313
Alignment:
Q  67 acatttcaactaatcatcccaatgatctatgctacaatcatcaag 111  Q
    ||||||||||||||| ||  || ||||||||||||||||||||||    
T  13423269 acatttcaactaatcctctgaaagatctatgctacaatcatcaag 13423313  T

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