View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13864_high_6 (Length: 595)
Name: NF13864_high_6
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 247 - 577
Target Start/End: Original strand, 56483802 - 56484132
Alignment:
| Q |
247 |
gcaggtccataacctgtttaatttcatgccacatgtccttcgccgagataccctcgtaagaaccagatataacaaagacagggcattctgagacatgaac |
346 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56483802 |
gcaggtccataacctgtttaatttcatgccacatgtccttcgccgagataccctcgtaagaaccagatataacaaagacagggcattctgagacatgaac |
56483901 |
T |
|
| Q |
347 |
atgttcggtctcttctgctgcaattgcaaatgtgatgggagattgctcatttgcagtcctgtacatgcatatatcaatttataaattcaaggattgaatt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
56483902 |
atgttcggtctcttctgctgcaattgcaaatgtgacgggagattgctcatttgcagtcctgtacatgcatgtatcaatttataaattcaaggattgaatt |
56484001 |
T |
|
| Q |
447 |
tcttttcatccattgcctaaaaagatattaacaagttatagttacttgtgatgtagaagcacaccatgcaccccatcaggcatcctagcatgagacaata |
546 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
56484002 |
tcttttcatccattgcctaaaaagatattaacaagttatagttacttgtgatgtagaagcacaccatgcaccccatcaggcatcctaacatgagacaata |
56484101 |
T |
|
| Q |
547 |
tgtatcttgaatgttagaataaagtacaggc |
577 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
56484102 |
tgtatcttgaatgttagaataaagtacaggc |
56484132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 56483557 - 56483768
Alignment:
| Q |
1 |
atatgatgaaagagtgacgtccaaagagacctaagtactgataattgtcatgataaaaagagtttcagatgcacaaaacaaaaggaaagtgacagaaagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56483557 |
atatgatgaaagagtgacgtccaaagagacctaagtactgataattgtcatgataaaaagagtttcagatgcacaaaacaaaaggaaagtgacagaaagg |
56483656 |
T |
|
| Q |
101 |
aaactccaagtacttgtgttataaaatgcttaatagagcacaatggtagcttatctgggagaagacagcatgaaggaaggatgaatagcataacatagtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56483657 |
aaactccaagtacttgtgttataaaatgcttaatagagcacgatggtagcttatctgggagaagacagcatgaaggaaggatgaatagcataacatagta |
56483756 |
T |
|
| Q |
201 |
gtaataccaaac |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
56483757 |
gtaataccaaac |
56483768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University