View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_high_8 (Length: 580)

Name: NF13864_high_8
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_high_8
NF13864_high_8
[»] chr4 (23 HSPs)
chr4 (153-562)||(23408412-23408821)
chr4 (157-431)||(23415712-23415986)
chr4 (153-430)||(23453376-23453653)
chr4 (157-430)||(23868733-23869006)
chr4 (157-430)||(24307224-24307497)
chr4 (153-430)||(23402071-23402348)
chr4 (157-430)||(23885828-23886101)
chr4 (157-430)||(26832736-26833009)
chr4 (157-430)||(26434025-26434298)
chr4 (157-430)||(26435805-26436078)
chr4 (157-430)||(34662045-34662318)
chr4 (9-119)||(24307076-24307186)
chr4 (9-122)||(26832588-26832701)
chr4 (13-113)||(23401931-23402031)
chr4 (246-378)||(23451788-23451920)
chr4 (9-122)||(26433877-26433990)
chr4 (9-122)||(26435657-26435770)
chr4 (13-113)||(23408861-23408961)
chr4 (13-122)||(23416018-23416127)
chr4 (13-122)||(23868589-23868698)
chr4 (9-122)||(23885680-23885793)
chr4 (12-116)||(34662359-34662463)
chr4 (13-110)||(23453696-23453793)
[»] chr1 (6 HSPs)
chr1 (157-407)||(41670401-41670651)
chr1 (154-427)||(40795767-40796040)
chr1 (305-419)||(33216594-33216708)
chr1 (157-407)||(29391467-29391717)
chr1 (352-430)||(45576399-45576477)
chr1 (249-285)||(33216558-33216594)
[»] chr7 (3 HSPs)
chr7 (305-428)||(47317431-47317554)
chr7 (157-407)||(40180297-40180547)
chr7 (249-285)||(47317395-47317431)
[»] chr2 (2 HSPs)
chr2 (340-392)||(14715433-14715485)
chr2 (13-61)||(14715372-14715420)
[»] chr8 (1 HSPs)
chr8 (157-282)||(29684701-29684826)


Alignment Details
Target: chr4 (Bit Score: 366; Significance: 0; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 153 - 562
Target Start/End: Complemental strand, 23408821 - 23408412
Alignment:
Q  153 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 252  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||    
T  23408821 tgtagaaacatacaagatctacatcttcaaagttctgaaacaagttcacccagacattggtatctcaagcaaagcgatgggtatcatgaacagtttcatc 23408722  T
Q  253 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23408721 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcagac 23408622  T
Q  353 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagacatttcgtttatgtttattggt 452  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  23408621 ttgttcttcctggagaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttactagctcttagacatttcgattatgtttattggt 23408522  T
Q  453 ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacttgaaaattgc 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  23408521 ttcttagtgttttaattttctgagttgtaatgaactaatgggatctgttgatgtcttttgtgtaagaaatggagttaatgatatttgacatgaaaattgc 23408422  T
Q  553 ttgtagaatt 562  Q
    ||||||||||    
T  23408421 ttgtagaatt 23408412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 157 - 431
Target Start/End: Complemental strand, 23415986 - 23415712
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23415986 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23415887  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23415886 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 23415787  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttagac 431  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||    
T  23415786 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaggctgtgactaagtttactagctcttagac 23415712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 153 - 430
Target Start/End: Complemental strand, 23453653 - 23453376
Alignment:
Q  153 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 252  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23453653 tgtagaaacatacaagatctacatcttcaaagttctgaatcatgttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23453554  T
Q  253 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23453553 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagtc 23453454  T
Q  353 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||    
T  23453453 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgaccaagtttactagttcttaga 23453376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 23868733 - 23869006
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23868733 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 23868832  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23868833 atatcttcgagaaacttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 23868932  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    ||||||||||||||||||||| ||||||||||||||||| || || |||||||||||||| || || |||||||    
T  23868933 tcttcctggtgaattggccaaacatgctgtttctgaaggaacaaaagctgtgactaagttcactagttcttaga 23869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 24307224 - 24307497
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||||||||||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24307224 gaaacatacaagatctatatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 24307323  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24307324 atatcttcgagaaactagctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgctgtcagacttgt 24307423  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    |||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||| || || |||||||    
T  24307424 tcttcctggtgaattggccaagcatgctgtttctgagggtaccaaagctgtgaccaagttcactagttcttaga 24307497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 153 - 430
Target Start/End: Original strand, 23402071 - 23402348
Alignment:
Q  153 tgtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatc 252  Q
    |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||    
T  23402071 tgtagaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatc 23402170  T
Q  253 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagac 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  23402171 aatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggc 23402270  T
Q  353 ttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    |||||||||||||||||||||||||||||||||| || || || ||||| |||||||| |||||||| || |||||||    
T  23402271 ttgttcttcctggtgaattggccaagcatgctgtctcagagggaaccaaagctgtgaccaagtttactagttcttaga 23402348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 23885828 - 23886101
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||    
T  23885828 gaaacatacaagatctacatcttcaaagttctgaagcaggttcacccagacattggtatctcaagcaaggccatgggtatcatgaacagtttcatcaatg 23885927  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  23885928 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcaggcttgt 23886027  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    |||||||||||||||||||||||||||||| ||||| || ||||| |||||||| |||||||| || |||||||    
T  23886028 tcttcctggtgaattggccaagcatgctgtctctgagggaaccaaagctgtgaccaagtttactagttcttaga 23886101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 26832736 - 26833009
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26832736 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26832835  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26832836 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26832935  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    ||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26832936 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26833009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 26434025 - 26434298
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| ||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26434025 gaaacatacaagatctacatcttcaaggttctgaaacaagttcatccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26434124  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26434125 atatcttcgagaaactcgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26434224  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    ||| || ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26434225 tctgcccggtgaattggccaagcatgctgtttctgagggtaccaaggctgtcactaagtttactagttcttaga 26434298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 157 - 430
Target Start/End: Original strand, 26435805 - 26436078
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  26435805 gaaacatacaagatctacatcttcaaggttctgaaacaagttcacccagacattggtatctcaagcaaagccatgggtatcatgaacagtttcatcaatg 26435904  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||    
T  26435905 atatcttcgagaaactcactcaagaatcttccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagaccgcggtcaggcttgt 26436004  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    ||| || ||||||||||||||||||| ||||||||| || ||||||||||| ||||||||||| || |||||||    
T  26436005 tctgcccggtgaattggccaagcatgatgtttctgagggtaccaaggctgtcactaagtttaccagttcttaga 26436078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 157 - 430
Target Start/End: Complemental strand, 34662318 - 34662045
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||| |||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  34662318 gaaacctacaagatctacatcttcaaggttctgaaacaagttcaccctgacattggtatctcaagcaaagccatgggtattatgaacagtttcatcaatg 34662219  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    |||||||||||||||| ||||||||||| |||||||||||  | || ||||||||||| || || ||||| ||||||||||||||||| || || |||||    
T  34662218 atatcttcgagaagctcgctcaagaatcttccagacttgcaaggtataacaagaagccgacgataacttcgagggaaattcagactgctgttaggcttgt 34662119  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    ||||||||| |||||||| ||||||||||| ||||| || ||||| ||||| || ||||||||||| |||||||    
T  34662118 tcttcctggagaattggctaagcatgctgtgtctgagggtaccaaagctgtaacgaagtttacaagttcttaga 34662045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 9 - 119
Target Start/End: Original strand, 24307076 - 24307186
Alignment:
Q  9 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  24307076 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaggctcctgctgagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 24307175  T
Q  109 ggttcagctgc 119  Q
    ||||| |||||    
T  24307176 ggttccgctgc 24307186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26832588 - 26832701
Alignment:
Q  9 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 108  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  26832588 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccaaaggccggaaagaagcttccaaaggaaggt 26832687  T
Q  109 ggttcagctgccgg 122  Q
    |||||||| |||||    
T  26832688 ggttcagccgccgg 26832701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 13 - 113
Target Start/End: Original strand, 23401931 - 23402031
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23401931 gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 23402030  T
Q  113 c 113  Q
    |    
T  23402031 c 23402031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 246 - 378
Target Start/End: Complemental strand, 23451920 - 23451788
Alignment:
Q  246 tttcatcaatgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgca 345  Q
    ||||||||| |||||||| |||||||| ||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  23451920 tttcatcaacgatatctttgagaagctcgctcaagaatactccagacttgctcgctacaacaagaagccaacaatcacttcaagggaaattcagaccgca 23451821  T
Q  346 gtcagacttgttcttcctggtgaattggccaag 378  Q
    ||||| |||||||| || |||||||||||||||    
T  23451820 gtcaggcttgttctgcccggtgaattggccaag 23451788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26433877 - 26433990
Alignment:
Q  9 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 108  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  26433877 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggt 26433976  T
Q  109 ggttcagctgccgg 122  Q
    |||||||| |||||    
T  26433977 ggttcagccgccgg 26433990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 26435657 - 26435770
Alignment:
Q  9 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 108  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||    
T  26435657 agcagagaagaaaccagcagaggagaagaagtccaccgtcgctgagaaagctccggcggagaagaagccgaaggccggaaagaagcttccaaaggaaggt 26435756  T
Q  109 ggttcagctgccgg 122  Q
    |||||||| |||||    
T  26435757 ggttcagccgccgg 26435770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 13 - 113
Target Start/End: Complemental strand, 23408961 - 23408861
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 112  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  23408961 gagaagaaacccgctgaggagaagaagtccaccgtcgccgagaaggctccggcggagaagaagcccaaggcaggaaagaagctaccaaaggaaggtggtt 23408862  T
Q  113 c 113  Q
    |    
T  23408861 c 23408861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Complemental strand, 23416127 - 23416018
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 112  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||    
T  23416127 gagaagaaaccagctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggcagggaagaagctaccaaaggaaggtggtt 23416028  T
Q  113 cagctgccgg 122  Q
    ||||||||||    
T  23416027 cagctgccgg 23416018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 13 - 122
Target Start/End: Original strand, 23868589 - 23868698
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggtt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||    
T  23868589 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggtggtt 23868688  T
Q  113 cagctgccgg 122  Q
    |||| |||||    
T  23868689 cagccgccgg 23868698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 9 - 122
Target Start/End: Original strand, 23885680 - 23885793
Alignment:
Q  9 agcagagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggt 108  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||    
T  23885680 agcagagaagaaaccagctgaggagaagaagtccaccgtcgccgagaaagctcctgctgagaagaagcccaaggctggaaagaagcttccaaaggaaggt 23885779  T
Q  109 ggttcagctgccgg 122  Q
    |||||||| |||||    
T  23885780 ggttcagccgccgg 23885793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 34662463 - 34662359
Alignment:
Q  12 agagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtggt 111  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||| | |||    
T  34662463 agagaagaaacctgcagaggagaagaaatccaccgtcgccgagaaagctccggcagagaagaagccaaaggccggaaagaagcttccaaaggaaagcggt 34662364  T
Q  112 tcagc 116  Q
    |||||    
T  34662363 tcagc 34662359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 23453793 - 23453696
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctccggcggagaagaagccaaaggcaggaaagaagctaccaaaggaaggtgg 110  Q
    ||||||||||| || |||||||||||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||||| || |||||||||||    
T  23453793 gagaagaaacctgctgaggagaagaagtccaccgttgccgagaaagctccagcagagaagaagccaaaggctggaaagaagcttcctaaggaaggtgg 23453696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 157 - 407
Target Start/End: Original strand, 41670401 - 41670651
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||| |||||||||||||| ||||| || || || || ||||| || |||||||||||||||||||| || ||||| || |||||||| ||||||||||    
T  41670401 gaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggtatctcaagcaaggctatggggatcatgaacagcttcatcaatg 41670500  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||| |||||||| ||||| ||||| |||||||||||  | |||||||||||||| |||||||||||  |||| || |||||||| ||  | |||||    
T  41670501 atatctttgagaagctcgctcaggaatcttccagacttgcgaggtacaacaagaagcctacaatcacttctcgggagatacagactgctgttcgtcttgt 41670600  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 407  Q
    ||| || |||||| | || ||||||||||| ||||| || |||||||||||    
T  41670601 tctccccggtgaacttgctaagcatgctgtctctgagggaaccaaggctgt 41670651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 154 - 427
Target Start/End: Original strand, 40795767 - 40796040
Alignment:
Q  154 gtagaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatca 253  Q
    |||||||| |||||||||||||| ||||| || || || || ||||| || |||||||| ||||| ||||| || ||||| || ||||||||||||||||    
T  40795767 gtagaaacctacaagatctacatcttcaaggttctcaagcaggttcatcctgacattggaatctccagcaaggctatggggatcatgaacagtttcatca 40795866  T
Q  254 atgatatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagact 353  Q
    |||| ||||| |||||||| ||||| |||||||||||||| ||||| ||||||||||| || || ||||| ||  | || ||||||||||| ||  | ||    
T  40795867 atgacatctttgagaagctcgctcaggaatcatccagactcgctcgctacaacaagaaacctaccatcacctctcgtgagattcagactgctgttcgtct 40795966  T
Q  354 tgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctctt 427  Q
     |||||||| || ||| | |||||||| ||||| || || || ||||| || || ||||| |||||||||||||    
T  40795967 cgttcttcccggcgaacttgccaagcacgctgtctccgagggaaccaaagcagtcactaaatttacaagctctt 40796040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 33216594 - 33216708
Alignment:
Q  305 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 404  Q
    |||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| ||||||||||||||| |||||||||||||| || ||||||||    
T  33216594 acaagaagccaacaatcacttcaaggaaaattcaaactgctgtcagacttgttcttcttggtgaattggccaaacatgctgtttctgagggtaccaaggc 33216693  T
Q  405 tgtgactaagtttac 419  Q
    |||||| ||||||||    
T  33216694 tgtgaccaagtttac 33216708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 157 - 407
Target Start/End: Original strand, 29391467 - 29391717
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||| || ||||| ||||| ||||| || || ||||| ||||| || || || ||||| ||   |||||| ||||| || |||||||||||||||||||    
T  29391467 gaaacctataagatttacatcttcaaggttctcaaacaggttcatcctgatataggtatttcttccaaagctatggggattatgaacagtttcatcaatg 29391566  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||| ||||| || ||||| ||| | || ||| | ||||||||||||||||| || || || || || ||||| ||||| || || ||  |  | ||    
T  29391567 atatctttgagaaactcgctcaggaagcttctagattggctcgttacaacaagaaaccgacgattacgtcgagggagattcaaacggctgtgcgtttggt 29391666  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 407  Q
    |||||| ||||||||||| || ||||||||||| ||||| |||||||||||    
T  29391667 tcttcccggtgaattggcgaaacatgctgtttccgaaggaaccaaggctgt 29391717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 430
Target Start/End: Original strand, 45576399 - 45576477
Alignment:
Q  352 cttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgtgactaagtttacaagctcttaga 430  Q
    |||||||| || | ||||||||| ||||||| ||||||||| || ||||| |||||||| || || |||||||||||||    
T  45576399 cttgttctgcccgatgaattggctaagcatgttgtttctgagggtaccaaagctgtgaccaaattcacaagctcttaga 45576477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 33216558 - 33216594
Alignment:
Q  249 catcaatgatatcttcgagaagcttgctcaagaatca 285  Q
    ||||||||||||||||| |||||||||||||||||||    
T  33216558 catcaatgatatcttcgtgaagcttgctcaagaatca 33216594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 305 - 428
Target Start/End: Original strand, 47317431 - 47317554
Alignment:
Q  305 acaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggc 404  Q
    |||||||||||||||||||||||||||||||||| ||||  ||||||||| |||||||||||||||||||||| |||| ||||||||| || ||||| ||    
T  47317431 acaagaagccaacaatcacttcaagggaaattcaaactgttgtcagacttattcttcctggtgaattggccaaacatgttgtttctgagggtaccaaagc 47317530  T
Q  405 tgtgactaagtttacaagctctta 428  Q
    |||||| |||||||| || |||||    
T  47317531 tgtgaccaagtttactagttctta 47317554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 157 - 407
Target Start/End: Complemental strand, 40180547 - 40180297
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||| |||||||| ||||| ||||| || |||||||| ||||| || || || ||| | |||||||| || |||||||| |||||||||||||| || |    
T  40180547 gaaacctacaagatatacatcttcaaggttctgaaacaggttcatcctgatatcggtgtttcaagcaaggctatgggaatcatgaacagtttcattaacg 40180448  T
Q  257 atatcttcgagaagcttgctcaagaatcatccagacttgctcgttacaacaagaagccaacaatcacttcaagggaaattcagactgcagtcagacttgt 356  Q
    ||||||| ||||| || ||||| ||||| ||  |  | ||| | || ||||||||||| || || ||||| ||||| ||||| ||||| || ||| | ||    
T  40180447 atatctttgagaaactcgctcaggaatcgtctcgtttggctaggtataacaagaagccgacgattacttctagggagattcaaactgctgttagattggt 40180348  T
Q  357 tcttcctggtgaattggccaagcatgctgtttctgaaggcaccaaggctgt 407  Q
    ||||||||| |||||||| || ||||||||||||||||| || ||||||||    
T  40180347 tcttcctggagaattggctaaacatgctgtttctgaagggactaaggctgt 40180297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 285
Target Start/End: Original strand, 47317395 - 47317431
Alignment:
Q  249 catcaatgatatcttcgagaagcttgctcaagaatca 285  Q
    ||||||||||||||||| |||||||||||||||||||    
T  47317395 catcaatgatatcttcgtgaagcttgctcaagaatca 47317431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 340 - 392
Target Start/End: Original strand, 14715433 - 14715485
Alignment:
Q  340 actgcagtcagacttgttcttcctggtgaattggccaagcatgctgtttctga 392  Q
    |||||||| ||||||||||||||||| |||||||||||||||| ||| |||||    
T  14715433 actgcagtgagacttgttcttcctggagaattggccaagcatgttgtgtctga 14715485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 14715372 - 14715420
Alignment:
Q  13 gagaagaaacccgcagaggagaagaagtccaccgtcgccgagaaagctc 61  Q
    |||||||||||||||||||||||||| | ||| ||||  ||||||||||    
T  14715372 gagaagaaacccgcagaggagaagaaatacactgtcgaggagaaagctc 14715420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 157 - 282
Target Start/End: Original strand, 29684701 - 29684826
Alignment:
Q  157 gaaacatacaagatctacatattcaaagtactgaaacaagttcacccagacattggtatctcaagcaaagccatgggaataatgaacagtttcatcaatg 256  Q
    ||||| |||||||| || |||||||| || || ||||||||||| || | ||||||| | ||||| ||||| |||||| | || ||||||||| | || |    
T  29684701 gaaacctacaagatatatatattcaaggttctcaaacaagttcatcctgccattggtgtttcaagtaaagctatgggagttattaacagtttcgtgaacg 29684800  T
Q  257 atatcttcgagaagcttgctcaagaa 282  Q
    |||||||  |||| || |||||||||    
T  29684801 atatctttaagaaactcgctcaagaa 29684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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