View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_high_9 (Length: 579)
Name: NF13864_high_9
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 140 - 562
Target Start/End: Complemental strand, 5433599 - 5433177
Alignment:
| Q |
140 |
gtcttcagctattgcttggataagaaaaggtaaagagaaggtgagaaaaatgtctctgtgttcgaacttggtcgcagaattttttatgtttccttggtta |
239 |
Q |
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| T |
5433599 |
gtcttcagctattgcttggataagaaaaggtaaagagaaggtgagaaaaatgtctttgtgttcgaacttggtcgcagaatttttgatgtttccttggtta |
5433500 |
T |
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| Q |
240 |
tcggttaacgcctcattgagagatactcatttaagtggtgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaaga |
339 |
Q |
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| T |
5433499 |
tcggttaaagcctcattgagagatactcatttaagtggtgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaaga |
5433400 |
T |
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| Q |
340 |
aagatttgaacatcagtgagaattccaaagctttgtggaggttaaggtcagcatgtgagaaagtaaagagctttgtctacttttcactgttactagagct |
439 |
Q |
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| T |
5433399 |
aagatttgaacatcagtgagaattccaaagctttgtggagattaaggtcagcatgtgataaagtaaagagctctgtctacttttcactgttactagagct |
5433300 |
T |
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| Q |
440 |
ttgtttgttactagagctttgtttgagggaataaaccaggacttgtttaaacaatgcatggagacactggaaannnnnnnggatgaggcaaaaataagta |
539 |
Q |
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| T |
5433299 |
ttgtttgttactagagctttgtttgagggaataaaccaggacttgtttaaacaatgcatggagacactggaaaaattttaggatgaggcaaaaataagta |
5433200 |
T |
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| Q |
540 |
aaaatcaaggaaattattagagt |
562 |
Q |
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| T |
5433199 |
aaaatcaaggaaattattagagt |
5433177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 242 - 409
Target Start/End: Original strand, 5445785 - 5445952
Alignment:
| Q |
242 |
ggttaacgcctcattgagagatactcatttaagtggtgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaagaaa |
341 |
Q |
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| T |
5445785 |
ggttaaggccacattgggagatactcatttgggtggtattgatttcgataacaatttggtgaaccgtcttgttgaattatttcatagaaagtacaagaag |
5445884 |
T |
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| Q |
342 |
gatttgaacatcagtgagaattccaaagctttgtggaggttaaggtcagcatgtgagaaagtaaagag |
409 |
Q |
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| T |
5445885 |
gatttgaagatcagtgagaatttcaaagctttggggaggttaagatcagcatgtgagaaagcaaagag |
5445952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 5433738 - 5433632
Alignment:
| Q |
1 |
cccagatgacgaagtcgattgaaaccctgataaggttagggttttctcattttctcgaaggtgattgtacatagaggtggtccggcctgttattgtaaac |
100 |
Q |
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| T |
5433738 |
cccagatgacgaagtcgattgaaaccctgataaggttagggttttctcattttctcgaaggttattgtacatagaggtggtccagtctgttattgtaaac |
5433639 |
T |
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| Q |
101 |
ctgaatt |
107 |
Q |
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| T |
5433638 |
ctgaatt |
5433632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 278 - 409
Target Start/End: Complemental strand, 5440853 - 5440718
Alignment:
| Q |
278 |
tgttgactttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaagaaagatttgaacatcagtgagaattccaaagctttgtgg |
377 |
Q |
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| T |
5440853 |
tgttgagtttgataacaatttggtgaaccttcttgttgaattattttatagaaagtacaagaaggatttgaagatcagtgagaattccaaagctttgggg |
5440754 |
T |
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| Q |
378 |
ag----gttaaggtcagcatgtgagaaagtaaagag |
409 |
Q |
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| T |
5440753 |
aggttagttaaggtcagcatgtgagaaagcaaagag |
5440718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 285 - 373
Target Start/End: Complemental strand, 5432541 - 5432453
Alignment:
| Q |
285 |
tttgataacaatttggtgaaccgtcttgttgaattgtttcatagaaagtacaagaaagatttgaacatcagtgagaattccaaagcttt |
373 |
Q |
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| T |
5432541 |
tttgataacaatttggtgaactgtcttgttgaattgttaaagagaatgtacaagaaagacttgaacattggtgagaattataaagcttt |
5432453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 5446025 - 5446084
Alignment:
| Q |
445 |
tgttactagagctttgtttgagggaataaaccaggacttgtttaaacaatgcatggagac |
504 |
Q |
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| T |
5446025 |
tgttactagagctttctttgaggaaataaacaaggatttgttcaaaaagtgcatggagac |
5446084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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