View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_11 (Length: 551)

Name: NF13864_low_11
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_11
NF13864_low_11
[»] chr4 (12 HSPs)
chr4 (10-272)||(23441120-23441382)
chr4 (360-535)||(23441473-23441648)
chr4 (382-500)||(35292867-35292987)
chr4 (386-521)||(42679189-42679327)
chr4 (386-493)||(48546995-48547104)
chr4 (365-476)||(867447-867562)
chr4 (378-480)||(25856936-25857041)
chr4 (366-490)||(4154410-4154536)
chr4 (387-476)||(56094380-56094471)
chr4 (456-508)||(26645016-26645069)
chr4 (395-521)||(47312081-47312210)
chr4 (91-143)||(23887382-23887434)
[»] chr1 (11 HSPs)
chr1 (386-476)||(35307251-35307343)
chr1 (365-522)||(15183826-15183988)
chr1 (394-522)||(31165623-31165755)
chr1 (385-476)||(31065206-31065299)
chr1 (386-522)||(27458239-27458379)
chr1 (396-473)||(2765644-2765723)
chr1 (395-521)||(4080444-4080571)
chr1 (402-505)||(14578441-14578547)
chr1 (377-477)||(46798399-46798500)
chr1 (387-519)||(48496949-48497084)
chr1 (461-520)||(42242041-42242099)
[»] chr8 (12 HSPs)
chr8 (386-490)||(15175294-15175400)
chr8 (383-477)||(39303799-39303895)
chr8 (386-490)||(26600833-26600939)
chr8 (401-521)||(4606281-4606404)
chr8 (385-490)||(26916305-26916412)
chr8 (386-490)||(32350798-32350904)
chr8 (386-490)||(32367459-32367565)
chr8 (386-490)||(35170764-35170870)
chr8 (394-522)||(43120772-43120904)
chr8 (457-522)||(10839673-10839739)
chr8 (386-472)||(11175317-11175405)
chr8 (386-431)||(31447332-31447377)
[»] scaffold0001 (1 HSPs)
scaffold0001 (386-476)||(508075-508167)
[»] chr6 (2 HSPs)
chr6 (386-522)||(11751786-11751925)
chr6 (455-522)||(23888221-23888286)
[»] chr7 (3 HSPs)
chr7 (364-519)||(34595867-34596027)
chr7 (385-490)||(47085017-47085124)
chr7 (457-519)||(41947051-41947113)
[»] chr3 (5 HSPs)
chr3 (386-522)||(16194289-16194429)
chr3 (384-521)||(43369749-43369889)
chr3 (387-521)||(33282644-33282780)
chr3 (385-440)||(36260778-36260833)
chr3 (395-490)||(29306170-29306267)
[»] chr2 (9 HSPs)
chr2 (387-521)||(1130804-1130938)
chr2 (386-489)||(5187991-5188096)
chr2 (385-520)||(33428754-33428891)
chr2 (394-490)||(83546-83644)
chr2 (386-522)||(9298815-9298955)
chr2 (381-521)||(36472409-36472551)
chr2 (386-490)||(10221496-10221602)
chr2 (402-486)||(21437136-21437222)
chr2 (413-489)||(43080958-43081036)
[»] chr5 (2 HSPs)
chr5 (385-519)||(5177373-5177510)
chr5 (385-433)||(5473887-5473935)


Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 10 - 272
Target Start/End: Original strand, 23441120 - 23441382
Alignment:
Q  10 attattctggcatgattaaaagaatcagtacttcattgctctgcacataaaaaattaagtgacattagcaatagtatcgtaataaaaattgcacaattaa 109  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  23441120 attattctggcatgatcaaaagaatcagtacttcattgctctgcacataaaaaattaagtgacattagcaatagtatggttataaaaattgcacaattaa 23441219  T
Q  110 tatagggtaactgcaatattattcagcatatgtactaatggggaattatgaaatagttactgaactatcttctaaaccctggtttataggaataagatta 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  23441220 tatagggtaactgcaatattattcagcatatgtactaatggggaaatatgaaatagttactgaactatcttctaaaccctggtttataggaataagttta 23441319  T
Q  210 tcatttatatcagtactatccagcttatagaaattagaaaaaatacctcctggagtgctttaa 272  Q
    |||||||||| |||||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  23441320 tcatttatattagtactatccagcttatagaaattaggaaaaatatctcctagagtgctttaa 23441382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 360 - 535
Target Start/End: Original strand, 23441473 - 23441648
Alignment:
Q  360 gtcataatatatacacgattatccatttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtttgaca 459  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23441473 gtcataatatatacacgattatccatttttcagtcaactttgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtttgaca 23441572  T
Q  460 tcaaacatgattacttacgcatattttcttcctttgttttttaattcaatcttaattttacattcataccatcaac 535  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||    
T  23441573 tcaaacatgattacttacgcatattttcttcctttgtttttgaattcaatcttaattttacattcatactatcaac 23441648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 382 - 500
Target Start/End: Original strand, 35292867 - 35292987
Alignment:
Q  382 ccatttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgc 479  Q
    |||||||||||||||||| |||||||||| ||||| ||  ||||| ||||||| |||||| | ||||| ||  |||||||||||||||||||||  || |    
T  35292867 ccatttttcagtcaactttgttaaaaagtgtttatggacaatttagcattgaggtggtaagttcaaaagtgtttttgacatcaaacatgattacgcactc 35292966  T
Q  480 atattttcttcctttgttttt 500  Q
    | ||||||||| |||||||||    
T  35292967 acattttcttcttttgttttt 35292987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 386 - 521
Target Start/End: Original strand, 42679189 - 42679327
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||| |||| |||  ||||||| ||||  | ||||||||||||||||| ||  |||||    
T  42679189 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatagtaggtccaaaagtgtttataacatcaaacatgattacgtatacatat 42679288  T
Q  484 tttcttcct-ttgttttttaattcaatcttaattttaca 521  Q
    ||| ||| | || ||||| ||||||| | ||||||||||    
T  42679289 ttttttcttattatttttgaattcaagcctaattttaca 42679327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 386 - 493
Target Start/End: Complemental strand, 48547104 - 48546995
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcatat 483  Q
    |||| |||||||||||||||||||| | ||||||  ||||||||||||| || ||  ||||||  |||||  ||||||||||||||| ||||||||||||    
T  48547104 tttttagtcaacttcgttaaaaagtgtctatagactatttaacattgaggtgatagctccaaatgtgtttatgacatcaaacatgataacttacgcatat 48547005  T
Q  484 tttcttcctt 493  Q
    ||| ||||||    
T  48547004 ttttttcctt 48546995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 365 - 476
Target Start/End: Original strand, 867447 - 867562
Alignment:
Q  365 aatatatacacgattatccat-ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattga-gatggtaaatccaaaaatgttt--gacat 460  Q
    ||||| ||||| || |||||| ||||||||||||||||||||||||| ||||||||  |||||||||| | |||||||  | |||||||  ||  |||||    
T  867447 aatatttacactatcatccatcttttcagtcaacttcgttaaaaagtgtttatagactatttaacatttaagatggtaggttcaaaaatacttatgacat 867546  T
Q  461 caaacatgattactta 476  Q
    ||||||||||||||||    
T  867547 caaacatgattactta 867562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 378 - 480
Target Start/End: Original strand, 25856936 - 25857041
Alignment:
Q  378 ttatccattttt--cagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattac 473  Q
    ||||||||||||  ||| ||||||| |||||| |  ||||| || |||||||||||||| ||||| |||||||||||||  ||||||||||||||||||     
T  25856936 ttatccattttttccagccaacttctttaaaa-gcgtttatggaccatttaacattgaggtggtagatccaaaaatgtttatgacatcaaacatgattat 25857034  T
Q  474 ttacgca 480  Q
    |||||||    
T  25857035 ttacgca 25857041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 366 - 490
Target Start/End: Complemental strand, 4154536 - 4154410
Alignment:
Q  366 atatatacacgattatccatttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaa 463  Q
    |||||||||| | ||  |||||||||||||||||||||||||||| |||||  || ||||||||| ||| |||||  ||||||| ||||  ||| |||||    
T  4154536 atatatacactactaatcatttttcagtcaacttcgttaaaaagtgtttatgaattatttaacatcgaggtggtaggtccaaaagtgtttatgatatcaa 4154437  T
Q  464 acatgattacttacgcatattttcttc 490  Q
    |||| || || | | ||||||||||||    
T  4154436 acataatcacatgcacatattttcttc 4154410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 476
Target Start/End: Complemental strand, 56094471 - 56094380
Alignment:
Q  387 tttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattactta 476  Q
    |||||| ||||||| |||||| ||  ||||||| ||||||||||| ||||||||  | ||||| ||||  ||||||||||||||||||||||    
T  56094471 tttcagccaacttcattaaaatgtgcttatagaccatttaacattaagatggtaggttcaaaagtgtttatgacatcaaacatgattactta 56094380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 456 - 508
Target Start/End: Complemental strand, 26645069 - 26645016
Alignment:
Q  456 gacatcaaacatgattacttacgcatattttcttcc-tttgttttttaattcaa 508  Q
    |||||||||||||||||||| | ||||||||||||| ||||||||| |||||||    
T  26645069 gacatcaaacatgattacttgcacatattttcttccttttgtttttgaattcaa 26645016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 521
Target Start/End: Original strand, 47312081 - 47312210
Alignment:
Q  395 aacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatattttcttcct 492  Q
    ||||||||||||||||| ||||| || ||||||||||||  | |||  | ||||||||||  | ||||||||| ||||| |||  | | ||||||||| |    
T  47312081 aacttcgttaaaaagtacttataaattatttaacattgaagttgtaggttcaaaaatgtttataacatcaaacgtgattgcttgtgtacattttcttctt 47312180  T
Q  493 -ttgttttttaattcaatcttaattttaca 521  Q
     |||||||| ||||||| ||| ||||||||    
T  47312181 cttgtttttgaattcaagcttgattttaca 47312210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 143
Target Start/End: Complemental strand, 23887434 - 23887382
Alignment:
Q  91 ataaaaattgcacaattaatatagggtaactgcaatattattcagcatatgta 143  Q
    |||||||||| |||||||| | ||  |||||||||||||||||| ||||||||    
T  23887434 ataaaaattgaacaattaaaacagtataactgcaatattattcaacatatgta 23887382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 4e-24; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 386 - 476
Target Start/End: Complemental strand, 35307343 - 35307251
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattactta 476  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||| ||  ||||||||||||||||||||||||    
T  35307343 ttttcagccaacttcgttaaaaagtgtttatagatcatttaacattaagatggtaggtccaaaagtgtttttgacatcaaacatgattactta 35307251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 365 - 522
Target Start/End: Complemental strand, 15183988 - 15183826
Alignment:
Q  365 aatatatacacgattatccat-ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatc 461  Q
    ||||| ||||| || |||||| |||| || |||||||||||||||||  ||||||| ||||||||||| ||||||||  ||||||| ||  | |||||||    
T  15183988 aatatttacactatcatccatctttttagccaacttcgttaaaaagtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatc 15183889  T
Q  462 aaacatgattacttacgcatattttcttcct-ttgttttttaa-ttcaatcttaattttacat 522  Q
    |||||||||||||| |||| ||||||||| | |||||||| || ||||| | |||||||||||    
T  15183888 aaacatgattacttgcgcacattttcttcttgttgtttttgaatttcaaacctaattttacat 15183826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 394 - 522
Target Start/End: Original strand, 31165623 - 31165755
Alignment:
Q  394 caacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatattttcttcc 491  Q
    |||||||||||||| ||  ||||||| ||||||||||| ||||||||  ||||||| ||  | ||||||||||||||||||||||  || |||||||||     
T  31165623 caacttcgttaaaacgtgcttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttatacacattttcttct 31165722  T
Q  492 t-ttgttttttaa-ttcaatcttaattttacat 522  Q
    | |||||||| || ||||| |||||||||||||    
T  31165723 tcttgtttttgaatttcaagcttaattttacat 31165755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 476
Target Start/End: Complemental strand, 31065299 - 31065206
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattactta 476  Q
    |||||||| |||||||||||||||||  ||||||| ||||| | ||| ||||||||  ||||||||||  | ||| ||||||||||||||||||    
T  31065299 tttttcagccaacttcgttaaaaagtgcttatagaccatttgaaattaagatggtaggtccaaaaatgcttatgatatcaaacatgattactta 31065206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 386 - 522
Target Start/End: Original strand, 27458239 - 27458379
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||| |  ||||| | |||||||  || ||||||||  | ||||| |||||  |||||||||||||||||||||  || ||    
T  27458239 ttttcagccaacttcgttaaaaaatgcttataaaccatttaaacttaagatggtaggttcaaaagtgtttatgacatcaaacatgattacttatacacat 27458338  T
Q  484 tttcttcct-ttgttttttaa-ttcaatcttaattttacat 522  Q
    ||||||| | ||||||||||| ||||| | |||||||||||    
T  27458339 tttcttcttcttgttttttaatttcaaacataattttacat 27458379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 396 - 473
Target Start/End: Complemental strand, 2765723 - 2765644
Alignment:
Q  396 acttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattac 473  Q
    |||| |||||||| |||||||| |||||||||||||||| || || |||||||||||  | ||||||||||||| |||||    
T  2765723 actttgttaaaaaatatttataaatcatttaacattgaggtgatagatccaaaaatgcttatgacatcaaacattattac 2765644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 395 - 521
Target Start/End: Complemental strand, 4080571 - 4080444
Alignment:
Q  395 aacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaat---gtttgacatcaaacatgattacttacgcatattttcttcc 491  Q
    |||||||||||||| | ||||| ||| |||||||||||||||||||| |  |||| |    | | |||||||||||||||| |||| ||||||||||||     
T  4080571 aacttcgttaaaaaatgtttatggattatttaacattgagatggtaagttgaaaagttgcctataacatcaaacatgattagttactcatattttcttc- 4080473  T
Q  492 tttgttttttaattcaatcttaattttaca 521  Q
     |||||||| |||| || | ||||||||||    
T  4080472 -ttgtttttgaatttaagcataattttaca 4080444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 505
Target Start/End: Original strand, 14578441 - 14578547
Alignment:
Q  402 ttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatattttcttcct-ttgttt 498  Q
    |||||||||| ||||||||||||||||||| ||||||||  || ||||  |  | ||||||||||||||||||||||  || ||||| ||| | ||||||    
T  14578441 ttaaaaagtacttatagatcatttaacattaagatggtaggtctaaaagggcttatgacatcaaacatgattacttatacacatttttttcttcttgttt 14578540  T
Q  499 tttaatt 505  Q
    |||||||    
T  14578541 tttaatt 14578547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 377 - 477
Target Start/End: Complemental strand, 46798500 - 46798399
Alignment:
Q  377 attatccatttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattact 474  Q
    |||| ||||||||| |||||||| |||| |||||  ||||  | |||||||||||||| |||| | | ||||||||||  ||||||||||||||||||||    
T  46798500 attacccatttttcggtcaactttgttagaaagtgcttatgaaccatttaacattgagttggt-agttcaaaaatgtttatgacatcaaacatgattact 46798402  T
Q  475 tac 477  Q
    |||    
T  46798401 tac 46798399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 519
Target Start/End: Original strand, 48496949 - 48497084
Alignment:
Q  387 tttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatatt 484  Q
    ||||||||| |||||||||||| |||||||  | |||||||||||||| |||||  | |||||  |  | ||| |||||| | |||||||||| || |||    
T  48496949 tttcagtcagcttcgttaaaaaatatttatgaaccatttaacattgaggtggtaggttcaaaagggcttatgatatcaaataggattacttacacaaatt 48497048  T
Q  485 ttcttcct-ttgttttttaattcaatcttaatttta 519  Q
    || ||| | |||||||| ||||||| ||||||||||    
T  48497049 ttattcttattgtttttgaattcaagcttaatttta 48497084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 461 - 520
Target Start/End: Complemental strand, 42242099 - 42242041
Alignment:
Q  461 caaacatgattacttacgcatattttcttcctttgttttttaattcaatcttaattttac 520  Q
    ||||||| ||||||||||||||||||||| |||||||||| ||| ||| | |||||||||    
T  42242099 caaacatcattacttacgcatattttctt-ctttgtttttgaatgcaagcataattttac 42242041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 386 - 490
Target Start/End: Complemental strand, 15175400 - 15175294
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatat 483  Q
    ||||||||||||||||| |||||||  ||||||||||||||| ||| ||||||||  ||||||||||  | ||||||||||||||||||||||| || ||    
T  15175400 ttttcagtcaacttcgtcaaaaagtgcttatagatcatttaatattaagatggtaggtccaaaaatgcttatgacatcaaacatgattacttacacacat 15175301  T
Q  484 tttcttc 490  Q
    |||||||    
T  15175300 tttcttc 15175294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 39303799 - 39303895
Alignment:
Q  383 catttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttac 477  Q
    |||||||||||||||||||||||||  |||||||  ||||||||||||||| ||||||  ||||||||||  | ||| | |||||||||||||||||    
T  39303799 catttttcagtcaacttcgttaaaatatatttatgaatcatttaacattgaaatggtaggtccaaaaatgattatgaaaacaaacatgattacttac 39303895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 26600833 - 26600939
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||||| |||||| |  |||||||||| ||||||||  ||||||| ||  | ||||||||||||||||||||||  || ||    
T  26600833 ttttcagccaacttcgttaaaaagtgtttataaacaatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacatgattacttatacacat 26600932  T
Q  484 tttcttc 490  Q
    |||||||    
T  26600933 tttcttc 26600939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 401 - 521
Target Start/End: Complemental strand, 4606404 - 4606281
Alignment:
Q  401 gttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaa--atgtttgacatcaaacatgattacttacgcatattttcttcct-ttgtt 497  Q
    ||||||| || ||||| ||||||||||||||||| || || ||||||||  || | |||||||||| || ||| |||| ||||||||| ||| | |||||    
T  4606404 gttaaaaggtgtttatggatcatttaacattgaggtgttagatccaaaagtatttatgacatcaaatataattccttatgcatatttttttcttcttgtt 4606305  T
Q  498 ttttaattcaatcttaattttaca 521  Q
    ||||||||||| | ||||||||||    
T  4606304 ttttaattcaagcataattttaca 4606281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 26916412 - 26916305
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcata 482  Q
    ||||||| ||||||||||||||| ||  |||| || ||||||| ||| || |||||  | ||||| |||||  |||||||| |||||||||| |||||||    
T  26916412 tttttcaatcaacttcgttaaaatgtgcttatggaccatttaaaattaaggtggtaggttcaaaagtgtttatgacatcaaccatgattactaacgcata 26916313  T
Q  483 ttttcttc 490  Q
    ||||||||    
T  26916312 ttttcttc 26916305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 32350798 - 32350904
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    |||||||  |||||| |||||||||  ||||||| ||||||||||| ||||| ||  || |||| ||||  ||||||||||||||||||||||  || ||    
T  32350798 ttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacacat 32350897  T
Q  484 tttcttc 490  Q
    |||||||    
T  32350898 tttcttc 32350904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 32367459 - 32367565
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    |||||||  |||||| |||||||||  ||||||| ||||||||||| ||||| ||  || |||| ||||  ||||||||||||||||||||||  || ||    
T  32367459 ttttcagctaacttcattaaaaagtgcttatagaccatttaacattaagatgataggtctaaaagtgtttatgacatcaaacatgattacttatacacat 32367558  T
Q  484 tttcttc 490  Q
    |||||||    
T  32367559 tttcttc 32367565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 35170764 - 35170870
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    |||||||  ||||||||||||| || ||||| || | ||||||||| ||||||||| |||||||  |||  |||||||||| |||||||||||  || ||    
T  35170764 ttttcagctaacttcgttaaaatgtgtttatggaccgtttaacattaagatggtaagtccaaaagagtttatgacatcaaagatgattacttatacacat 35170863  T
Q  484 tttcttc 490  Q
    |||||||    
T  35170864 tttcttc 35170870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 394 - 522
Target Start/End: Complemental strand, 43120904 - 43120772
Alignment:
Q  394 caacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatattttcttcc 491  Q
    |||||||||||| ||||   ||||||| |||||||||| ||||||||  ||||||| ||  | ||| ||||||||||||||||||  || |||||||||     
T  43120904 caacttcgttaagaagtggctatagataatttaacattaagatggtaggtccaaaagtgcttatgatatcaaacatgattacttatacacattttcttct 43120805  T
Q  492 t-ttgttttttaa-ttcaatcttaattttacat 522  Q
    | |||||||| || ||||| | |||||||||||    
T  43120804 tcttgtttttgaatttcaaacctaattttacat 43120772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 522
Target Start/End: Original strand, 10839673 - 10839739
Alignment:
Q  457 acatcaaacatgattacttacgcatattttcttcct-ttgttttttaattcaatcttaattttacat 522  Q
    ||||||||||||||||| |||||| ||||||||| | |||||||| |||||||  || |||||||||    
T  10839673 acatcaaacatgattacctacgcacattttcttcttcttgtttttgaattcaagtttgattttacat 10839739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 472
Target Start/End: Original strand, 11175317 - 11175405
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgatta 472  Q
    ||||||||||||||||||||||| | ||||||||  || ||||||| ||||| ||  | ||||| ||  | ||||||||||||||||||    
T  11175317 ttttcagtcaacttcgttaaaaaatgtttatagactatctaacattaagatgataggttcaaaagtgcttatgacatcaaacatgatta 11175405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 431
Target Start/End: Complemental strand, 31447377 - 31447332
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacatt 431  Q
    ||||||| ||||||| ||||||||| |||||||| |||||||||||    
T  31447377 ttttcagccaacttcattaaaaagtgtttatagaccatttaacatt 31447332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 386 - 476
Target Start/End: Original strand, 508075 - 508167
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattactta 476  Q
    ||||||| ||||||||||||||||| |||||||| |||||||| || ||||||||  ||||||||||||  ||||||||||||||||||||||    
T  508075 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacgttaagatggtaggtccaaaaatgtttatgacatcaaacatgattactta 508167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 386 - 522
Target Start/End: Original strand, 11751786 - 11751925
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||| ||||  |||||||||||| |||||||||  || ||    
T  11751786 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgacatcaaacacgattacttatacaaat 11751885  T
Q  484 tttcttcctttgttttttaa-ttcaatcttaattttacat 522  Q
    ||| ||   ||||||||||| |||||  ||||||||||||    
T  11751886 ttttttttcttgttttttaatttcaagtttaattttacat 11751925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 455 - 522
Target Start/End: Complemental strand, 23888286 - 23888221
Alignment:
Q  455 tgacatcaaacatgattacttacgcatattttcttcctttgttttttaattcaatcttaattttacat 522  Q
    ||||| ||||||||||||||||||||| ||||||||  |||||||  ||||||| | ||| |||||||    
T  23888286 tgacaccaaacatgattacttacgcatgttttcttc--ttgttttcgaattcaaacctaaatttacat 23888221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 519
Target Start/End: Original strand, 34595867 - 34596027
Alignment:
Q  364 taatatatacacgattatccat-ttttcagtcaacttcgttaaaaag-tatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgaca 459  Q
    |||||||||||| || |||||| ||||||| ||||||| |||||||  | |||||||| ||||||||||| ||||||||  ||||||| ||||  |||||    
T  34595867 taatatatacactatcatccatcttttcagccaacttcattaaaaaaatgtttatagaccatttaacattaagatggtaggtccaaaagtgtttatgaca 34595966  T
Q  460 tcaaacatgattacttacgcatattttcttcct-ttgttttttaattcaatcttaatttta 519  Q
    ||||| |||||||||||  || ||||||||| | || ||||| ||||||| ||||||||||    
T  34595967 tcaaatatgattacttatacacattttcttcttcttatttttgaattcaagcttaatttta 34596027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 385 - 490
Target Start/End: Complemental strand, 47085124 - 47085017
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcata 482  Q
    |||||||| ||||||||||||||||| ||| || ||||||||||||| ||||||||  | ||||||||||  | ||||||||||||  |||||| ||| |    
T  47085124 tttttcagccaacttcgttaaaaagtgtttgtaaatcatttaacattaagatggtaggttcaaaaatgtttattacatcaaacatggatacttatgcaca 47085025  T
Q  483 ttttcttc 490  Q
    ||||||||    
T  47085024 ttttcttc 47085017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 457 - 519
Target Start/End: Complemental strand, 41947113 - 41947051
Alignment:
Q  457 acatcaaacatgattacttacgcatattttcttcctttgttttttaattcaatcttaatttta 519  Q
    |||||||| ||||||||||||||| ||||| |  | |||||||| ||||||| ||||||||||    
T  41947113 acatcaaatatgattacttacgcacattttatcacgttgtttttaaattcaagcttaatttta 41947051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 16194429 - 16194289
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||||| |||||||| ||||||||||| ||||||||  ||||||| ||  | ||||||||||| |||||||| |  || ||    
T  16194429 ttttcagccaacttcgttaaaaagtgtttatagaccatttaacattaagatggtaggtccaaaagtgcttatgacatcaaacgtgattactcatacacat 16194330  T
Q  484 tttcttc-ctttgttttttaa-ttcaatcttaattttacat 522  Q
    |||||||  ||||||||| || ||||| | |||||||||||    
T  16194329 tttcttctttttgtttttgaatttcaagcctaattttacat 16194289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 384 - 521
Target Start/End: Original strand, 43369749 - 43369889
Alignment:
Q  384 atttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaa--atgtttgacatcaaacatgattacttacgcat 481  Q
    ||||||| ||||||||  |||||||||  ||||||| ||||||||||| | |||||||||||||||  || | ||||||||||||||||||||||  ||     
T  43369749 atttttcggtcaacttaattaaaaagtgcttatagaccatttaacattaatatggtaaatccaaaagtatttatgacatcaaacatgattacttatacac 43369848  T
Q  482 attttcttcct-ttgttttttaattcaatcttaattttaca 521  Q
    || |||||| | || ||||| ||||||| | ||||||||||    
T  43369849 atattcttcttattatttttgaattcaagcataattttaca 43369889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 521
Target Start/End: Original strand, 33282644 - 33282780
Alignment:
Q  387 tttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtttgacatcaaacatgattacttacgcatatttt 486  Q
    ||||| |||| ||| ||||||| ||||||| || ||||| |||||||| |||||  ||| ||| | | |||||||||||||||||||||||  | |||||    
T  33282644 tttcaatcaaattcattaaaaaatatttatggaccatttgacattgaggtggtaggtccgaaagtatatgacatcaaacatgattacttacatacatttt 33282743  T
Q  487 cttcct-ttgttttttaa-ttcaatcttaattttaca 521  Q
    |||| | ||||||| ||| ||||| | ||||||||||    
T  33282744 cttcttcttgttttgtaatttcaaacataattttaca 33282780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 440
Target Start/End: Original strand, 36260778 - 36260833
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggta 440  Q
    |||||||| ||||||| ||||||| || ||||||| |||||||||||||| |||||    
T  36260778 tttttcagccaacttctttaaaaattacttatagaccatttaacattgagttggta 36260833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 395 - 490
Target Start/End: Original strand, 29306170 - 29306267
Alignment:
Q  395 aacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcatattttcttc 490  Q
    ||||||||| |||||| |||||||| ||||||| ||| ||||||||  | ||||| || ||  |||||||||||| ||||||||  || |||||||||    
T  29306170 aacttcgttgaaaagtgtttatagaccatttaatattaagatggtaggttcaaaagtgcttatgacatcaaacattattacttatacacattttcttc 29306267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 387 - 521
Target Start/End: Complemental strand, 1130938 - 1130804
Alignment:
Q  387 tttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatatt 484  Q
    |||||| |||||||||||||| || || || || |||||||||||||  |||||| ||||||| ||  | |||||| |||||||||| |||||||| |||    
T  1130938 tttcagccaacttcgttaaaaggtgttcatggaccatttaacattgaagtggtaagtccaaaagtgcttatgacataaaacatgatttcttacgcacatt 1130839  T
Q  485 ttcttcctttgttttttaattcaatcttaattttaca 521  Q
    || |||  |||||||| ||||||| | ||||||||||    
T  1130838 ttgttc--ttgtttttgaattcaagcctaattttaca 1130804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 386 - 489
Target Start/End: Complemental strand, 5188096 - 5187991
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||||| |||||||| ||| ||||||| ||||| ||  ||||||| ||||  |||||||||||||||||| |||  || ||    
T  5188096 ttttcagccaacttcgttaaaaagtgtttatagaccatgtaacattaagatgttaggtccaaaagtgtttatgacatcaaacatgattatttatacacat 5187997  T
Q  484 tttctt 489  Q
    ||||||    
T  5187996 tttctt 5187991  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 385 - 520
Target Start/End: Original strand, 33428754 - 33428891
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttac--gca 480  Q
    |||||||| ||||||||||||||| | ||||   |||||||||||||||| |||||  | ||||| ||||  |||||||||| ||||||||||||  ||     
T  33428754 tttttcagccaacttcgttaaaaaatgtttacgaatcatttaacattgaggtggtatgttcaaaagtgtttatgacatcaaatatgattacttacttgcc 33428853  T
Q  481 tattttcttcctttgttttttaattcaatcttaattttac 520  Q
    | ||||||||  || ||||| ||||||| |||||||||||    
T  33428854 ttttttcttc--ttctttttgaattcaagcttaattttac 33428891  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 394 - 490
Target Start/End: Original strand, 83546 - 83644
Alignment:
Q  394 caacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatattttcttc 490  Q
    ||||||| ||||||| | ||||| || |||||||||||||| |||||  ||||||| ||||  || |||||||||||||| |||| ||| |||||||||    
T  83546 caacttcattaaaaaatgtttatcgaccatttaacattgaggtggtaggtccaaaagtgtttatgtcatcaaacatgattgcttatgcacattttcttc 83644  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 386 - 522
Target Start/End: Complemental strand, 9298955 - 9298815
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgttt--gacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||| || ||||||  ||| | |||||||||||||   |||||| |||||||| || ||  |||||||| ||||||||||||  || ||    
T  9298955 ttttcagccaacttcattgaaaagtgcttacaaatcatttaacattacaatggtagatccaaaagtgcttatgacatcaatcatgattacttatacacat 9298856  T
Q  484 tttcttcct-ttgttttt-taattcaatcttaattttacat 522  Q
    ||||||| | |||||||| || ||||| |||||||||||||    
T  9298855 tttcttcttcttgtttttgtatttcaagcttaattttacat 9298815  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 521
Target Start/End: Complemental strand, 36472551 - 36472409
Alignment:
Q  381 tccatttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacg 478  Q
    ||||| ||||| |||||||||||||||||| || || ||| ||||||||||||| ||  | ||| |||| ||||  ||||||||||| | |||||||||     
T  36472551 tccatgtttcaatcaacttcgttaaaaagtgttcatggataatttaacattgaggtgagagatctaaaagtgtttatgacatcaaacctaattacttaca 36472452  T
Q  479 catatt-ttcttcctttgttttttaattcaatcttaattttaca 521  Q
    ||| || |||||  ||||||||| ||||||| | ||| ||||||    
T  36472451 cattttcttctt-ttttgtttttgaattcaagcctaaatttaca 36472409  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 386 - 490
Target Start/End: Original strand, 10221496 - 10221602
Alignment:
Q  386 ttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatg--tttgacatcaaacatgattacttacgcatat 483  Q
    ||||||| ||||||||||||||  |  ||||||| ||||||||||| ||||||||  |  |||||||  | ||| ||||||||||||||||||  || ||    
T  10221496 ttttcagccaacttcgttaaaacatgcttatagaccatttaacattaagatggtaggttaaaaaatgcttatgatatcaaacatgattacttatacacat 10221595  T
Q  484 tttcttc 490  Q
    |||||||    
T  10221596 tttcttc 10221602  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 21437222 - 21437136
Alignment:
Q  402 ttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatatttt 486  Q
    |||||||||  ||||||| ||||||||||| ||||||||  | ||||| | ||  ||||||||||||||||||||||  ||||||||    
T  21437222 ttaaaaagtgcttatagagcatttaacattaagatggtaggttcaaaagtattgatgacatcaaacatgattacttatacatatttt 21437136  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 489
Target Start/End: Complemental strand, 43081036 - 43080958
Alignment:
Q  413 ttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcatattttctt 489  Q
    ||||||| ||||||||||| ||||||||| | ||||| ||||  ||||||||||||||| ||||||  || ||||||||    
T  43081036 ttatagaccatttaacattaagatggtaagttcaaaagtgtttatgacatcaaacatgagtacttatacacattttctt 43080958  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 519
Target Start/End: Original strand, 5177373 - 5177510
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattgagatggtaaatccaaaaatgtt--tgacatcaaacatgattacttacgcata 482  Q
    ||||||||  |||||||||||||| ||||||| || |||||||||||||| || ||  | ||||| ||||  | ||||||||||| || ||||| ||| |    
T  5177373 tttttcagcaaacttcgttaaaaaatatttatggaccatttaacattgagttgatatgttcaaaagtgtttataacatcaaacataatcacttatgcaca 5177472  T
Q  483 ttttcttcct-ttgttttttaattcaatcttaatttta 519  Q
    |||||||  | |||||||||| ||||| | ||||||||    
T  5177473 ttttcttgttgttgttttttatttcaaacctaatttta 5177510  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 385 - 433
Target Start/End: Original strand, 5473887 - 5473935
Alignment:
Q  385 tttttcagtcaacttcgttaaaaagtatttatagatcatttaacattga 433  Q
    ||||||| |||||||||||||||||| ||| | ||||||||| ||||||    
T  5473887 tttttcaatcaacttcgttaaaaagtgtttgtggatcatttatcattga 5473935  T

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