View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_14 (Length: 513)
Name: NF13864_low_14
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 183 - 428
Target Start/End: Complemental strand, 40672570 - 40672325
Alignment:
| Q |
183 |
tgttaattgtgtattagattatagtggcatcccttgtttaagttcgtttctccaatattaattaagtttgttaaagttcgtgtaacgctgggaaaagttc |
282 |
Q |
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| T |
40672570 |
tgttaattgtgtattagattatagtggcttcccttgtttaagtttgtttctccaatattaattaagtttgttaaagttcttgtaactctgggaaaagttc |
40672471 |
T |
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| Q |
283 |
ttgttaaagtttgtagtacaatatttaccttttttcagatgaaccaaaagtgtaaaattccttaatttgtaacctgagcgcagcatgtgatgtaaatact |
382 |
Q |
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| T |
40672470 |
ttgttaaagtttgtagtacaatatttaccttttttcacatgaaccaaaagtgtaaaattccttaatttgtaacctgagcgcagcatgtgatgtaaatact |
40672371 |
T |
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| Q |
383 |
agcagtagacgtccatgacattgaataagggttaacatttcagtac |
428 |
Q |
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| T |
40672370 |
agcagcagacgtccatgacattgaataagggttaacatttcagtac |
40672325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 40672787 - 40672603
Alignment:
| Q |
1 |
attcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgct |
100 |
Q |
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| T |
40672787 |
attcaaccccagctgctctacttcaaggtgtaacatgcactaacacttagtattattgatttacacttattagttactatattataggtatctgtgtgct |
40672688 |
T |
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| Q |
101 |
gtttgattaatttatgaattatttatatgtatattttcaagacttggtatctggctttgtgatcttaaattgtaggaaatcttgt |
185 |
Q |
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| T |
40672687 |
gtttgattaatttatgaattatttatatgtatattttcaagacttggtatctggctttgtgatcttaaattgtaggaaatcttgt |
40672603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 185
Target Start/End: Complemental strand, 40667711 - 40667605
Alignment:
| Q |
78 |
tatattataggtatctgtgtgctgtttgattaatttatgaattatttatatgtatattttcaagacttggtatctggctttgtgatcttaaattgtagga |
177 |
Q |
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| T |
40667711 |
tatattataggaatctgtgtgctgtttgattaacttatga-ttgtttatatgtatattttcaagacttggtatctggctttgtgatcttaaattttagga |
40667613 |
T |
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| Q |
178 |
aatcttgt |
185 |
Q |
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| T |
40667612 |
gatcttgt |
40667605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 294 - 390
Target Start/End: Complemental strand, 40665768 - 40665670
Alignment:
| Q |
294 |
tgtagtacaatatttaccttttttcagatgaaccaaaagtgtaaaattccttaatttgtaacctgagcgcagcatgtg--atgtaaatactagcagtag |
390 |
Q |
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| T |
40665768 |
tgtagtacaatatttaccttttttcacatgaaccaaaagtgtaaaattccttaatttgtaacctgagcgcagcttgtgatatgtaaatactagtagtag |
40665670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 279
Target Start/End: Complemental strand, 40667568 - 40667472
Alignment:
| Q |
183 |
tgttaattgtgtattagattatagtggcatcccttgtttaagttcgtttctccaatattaattaagtttgttaaagttcgtgtaacgctgggaaaag |
279 |
Q |
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| T |
40667568 |
tgttaattgtgtattagatcatagtggatgcccatgtttaagtttgtttctccaatattaattaaatttgtttaagttattgtaactctgggaaaag |
40667472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 466 - 495
Target Start/End: Complemental strand, 40672287 - 40672258
Alignment:
| Q |
466 |
tacacgtattagaagattgaatgtggtctt |
495 |
Q |
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| T |
40672287 |
tacacgtattagaagattgaatgtggtctt |
40672258 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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