View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_15 (Length: 504)
Name: NF13864_low_15
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 498
Target Start/End: Complemental strand, 36416116 - 36415637
Alignment:
| Q |
19 |
acctggtattagagacatgaaacctacattggttcttaatagaatcacttattggcaaaggttgttggatagagctattggtacgagaccgactggagcg |
118 |
Q |
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| T |
36416116 |
acctggtattagagacatgaaacctacattggttcttaatagaatcacttattggcaaaggttgttggatagagctattggtacgagaccgactggagcg |
36416017 |
T |
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| Q |
119 |
gctaagaataatcgtttggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgttttgg |
218 |
Q |
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| T |
36416016 |
gctaagaataatcgtttggttcagatttctctttatgctgttgtgcaagaaagttttgatctttacaaagatatctctgatgggcttggggttgttttgg |
36415917 |
T |
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| Q |
219 |
ataatttcttcaatttaccactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttattcttt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
36415916 |
ataatttcttcaatttaccactttcagcttgtgttactgcattcaatgcatgtgttaaatcatataaacaatttgatgagttatctgcattttattcatt |
36415817 |
T |
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| Q |
319 |
ttgtttaaatattggaattggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaaggatcaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36415816 |
ttgtttaaatattggaattggaaggtcctatgagtatccaagtgtgcaaaaagtttccgaagagcttatggagacattacaagctttcttgaaggatcaa |
36415717 |
T |
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| Q |
419 |
gcttcattccataatactgcttcaaaacattttattctttctgcacnnnnnnnntctaatgcaggtttaagttcatctca |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36415716 |
gcttcattccataatactgcttcaaaacattttattctttctgcacaaaaaaaatctaatgcaggtttaagttcatctca |
36415637 |
T |
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