View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_17 (Length: 498)

Name: NF13864_low_17
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_17
NF13864_low_17
[»] chr7 (13 HSPs)
chr7 (13-482)||(4714215-4714684)
chr7 (33-482)||(4704066-4704500)
chr7 (164-326)||(4705551-4705707)
chr7 (164-326)||(4788427-4788590)
chr7 (167-326)||(4700707-4700859)
chr7 (234-326)||(4833760-4833852)
chr7 (115-178)||(4705723-4705786)
chr7 (116-191)||(4833848-4833922)
chr7 (345-401)||(6676764-6676820)
chr7 (33-103)||(4700971-4701039)
chr7 (33-119)||(4834012-4834095)
chr7 (350-417)||(43989710-43989776)
chr7 (85-125)||(4788706-4788746)
[»] chr8 (1 HSPs)
chr8 (338-417)||(12158005-12158084)
[»] chr2 (2 HSPs)
chr2 (338-400)||(6911122-6911184)
chr2 (345-401)||(39403444-39403500)
[»] chr4 (1 HSPs)
chr4 (347-400)||(22679197-22679250)
[»] scaffold1750 (1 HSPs)
scaffold1750 (443-483)||(210-250)
[»] chr3 (2 HSPs)
chr3 (443-483)||(20934923-20934963)
chr3 (443-483)||(32976397-32976437)
[»] chr1 (1 HSPs)
chr1 (443-483)||(20306659-20306699)


Alignment Details
Target: chr7 (Bit Score: 470; Significance: 0; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 13 - 482
Target Start/End: Complemental strand, 4714684 - 4714215
Alignment:
Q  13 aatataaagtggatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaa 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714684 aatataaagtggatgctcgagtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaa 4714585  T
Q  113 tagaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaat 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714584 tagaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaat 4714485  T
Q  213 cacgtgtttgggaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttgg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714484 cacgtgtttgggaaataattataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttgg 4714385  T
Q  313 tgcaataatcgttacaatgtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714384 tgcaataatcgttacaatgtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgat 4714285  T
Q  413 tcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttag 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4714284 tcataaatcagctatattgaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttag 4714215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 33 - 482
Target Start/End: Complemental strand, 4704500 - 4704066
Alignment:
Q  33 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaagtatttggcccat 132  Q
    |||||||||| |||||||||||| ||| |||  | || |  || ||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  4704500 gtgaagtctttggaatattttggtatcaaag--atattttaaacagtcacggagaaagcaccaaaacgtcttattttaaatagaaaagtatttggcccat 4704403  T
Q  133 ttttg--ttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataa 230  Q
    ||||   |||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||  |||||       
T  4704402 tttttgtttaatttgtaaccacatacagggcaggacaacgaagatattagcatgtttaatttttccaagaaaaattccaaatcacgtgttctggaaa--- 4704306  T
Q  231 ttataattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgttacaat 330  Q
      ||||||||| |||||||||||||||||||||| ||        |   ||||||||||||||||||||||| |||||||| |||||||||| |||  ||    
T  4704305 --ataattattgctcataaattttatctttaatatac--------gaaaaattataagctttttcttttgtgtcccacttgatgcaataatcattatgat 4704216  T
Q  331 gtaagagtaatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattcataaatcagctatatt 430  Q
    | || ||||||| | ||||||||||||||| ||| |||||  |||| ||||||||||||||||||||||| ||||||||||  ||||||||| |||||||    
T  4704215 gcaacagtaatgtgctatatgtgagttaaagtttcatattacatgcaagaatagatgatgagaaaaatattagtgagatgacccataaatcaactatatt 4704116  T
Q  431 gaggtttttgatgaagatgtgatgtgaatctcacttttgtgactgatcttag 482  Q
     |||| ||||||||| ||||||||||| || | ||||  |||||||||||||    
T  4704115 aaggtctttgatgaatatgtgatgtgagtcgcgcttt--tgactgatcttag 4704066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 164 - 326
Target Start/End: Complemental strand, 4705707 - 4705551
Alignment:
Q  164 gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaat 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||     || |||||| |||||||| ||||||| ||||    
T  4705707 gacaactaagatattagcatgtttaatttttctaggaaaaattccaaattacgtgtttgggaaa-----atgattattgctcataaactttatctataat 4705613  T
Q  264 agacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 326  Q
    | ||| | ||||||| |||||| |||||| ||||||||| |||| ||||||||||||| ||||    
T  4705612 aaaccaaaaattgctcaattat-agctttatcttttgtgtcccagttggtgcaataatggtta 4705551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 164 - 326
Target Start/End: Complemental strand, 4788590 - 4788427
Alignment:
Q  164 gacaactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcat-aaat-------ttta 255  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||     ||||||||| ||||| ||||       ||||    
T  4788590 gacaactaagatattagcatgtttaatttttctaggaaaaa-tccaaatcacgtgtttgggaaa-----ataattattgctcatgaaatttatatattta 4788497  T
Q  256 tctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 326  Q
    | | ||||||||||| |||||||||||||| |||||| ||||||||| |||| ||||||||||||||||||    
T  4788496 tatataatagacctaaaattgctgaattat-agctttatcttttgtgtcccagttggtgcaataatcgtta 4788427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 167 - 326
Target Start/End: Complemental strand, 4700859 - 4700707
Alignment:
Q  167 aactaagatattagcatgtttaatttttctaagaaaaattccaaatcacgtgtttgggaaataattataattattactcataaattttatctttaataga 266  Q
    ||||||||||||| |||||||| ||||||||||||||||||||||||   |||||||||||     ||||||||| |||||||||||||||| |||||||    
T  4700859 aactaagatattaacatgttta-tttttctaagaaaaattccaaatccaatgtttgggaaa-----ataattattgctcataaattttatctataataga 4700766  T
Q  267 cctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 326  Q
    |||| ||||||| ||||| ||| ||||| |||  || |||||||||||||||||| ||||    
T  4700765 cctaaaattgctaaattagaag-tttttttttcttgtcccacttggtgcaataattgtta 4700707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 234 - 326
Target Start/End: Complemental strand, 4833852 - 4833760
Alignment:
Q  234 taattattactcataaattttatctttaatagacctacaattgctgaattataagctttttcttttgtgacccacttggtgcaataatcgtta 326  Q
    |||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||| || ||| ||||||||| |||||||||||||    
T  4833852 taattattgctcataaattttatctataatagacctaaaattgctgaattataagctttttcattcgtgccccacttggcgcaataatcgtta 4833760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 115 - 178
Target Start/End: Complemental strand, 4705786 - 4705723
Alignment:
Q  115 gaaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatatt 178  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||| |||| |||||||||||||||    
T  4705786 gaaaagtatttggaccaattttgttaatttgtgaccacatacaaggcaagacaactaagatatt 4705723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 116 - 191
Target Start/End: Complemental strand, 4833922 - 4833848
Alignment:
Q  116 aaaagtatttggcccatttttgttaaattgtgaccacatacagggcatgacaactaagatattagcatgtttaatt 191  Q
    |||||||||| | ||||||| ||||| |||||||||||| ||||||| ||||||| ||||||||||||||||||||    
T  4833922 aaaagtattttgaccatttt-gttaatttgtgaccacattcagggcaggacaacttagatattagcatgtttaatt 4833848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 6676820 - 6676764
Alignment:
Q  345 ttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatg 401  Q
    |||| |||||| |||| ||||||||||||||| ||| ||||||||||||||||||||    
T  6676820 ttatttgtgagctaaagttttatattggatgcaagagtagatgatgagaaaaatatg 6676764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 4701039 - 4700971
Alignment:
Q  33 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtct 103  Q
    |||||||||| ||||||||||| ||||||||  | || || || |||||| ||||||||||||||||||||    
T  4701039 gtgaagtctttggaatattttgccatctaag--atatttaaaatagtcacagagaaagctccaaaacgtct 4700971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 119
Target Start/End: Complemental strand, 4834095 - 4834012
Alignment:
Q  33 gtgaagtcttgggaatattttggcatctaagtaagatatataaaagtcacggagaaagctccaaaacgtctctttttaaatagaaaa 119  Q
    ||||||||||  |||||||||||||||||||  | || ||||| ||||| |||||||||||| ||||||||  ||||||| ||||||    
T  4834095 gtgaagtctttagaatattttggcatctaag--atatttataacagtcatggagaaagctcc-aaacgtcttattttaaaaagaaaa 4834012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 350 - 417
Target Start/End: Original strand, 43989710 - 43989776
Alignment:
Q  350 tgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattcata 417  Q
    |||||||||||||||||||||| |||| | | |||||| ||||||| || | ||||||||||||||||    
T  43989710 tgtgagttaaaattttatattgtatgcaatagtagatg-tgagaaacatttaagtgagatgattcata 43989776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 125
Target Start/End: Complemental strand, 4788746 - 4788706
Alignment:
Q  85 agaaagctccaaaacgtctctttttaaatagaaaagtattt 125  Q
    |||||||||||||||||||  |||| |||||||||||||||    
T  4788746 agaaagctccaaaacgtcttcttttcaatagaaaagtattt 4788706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 417
Target Start/End: Original strand, 12158005 - 12158084
Alignment:
Q  338 taatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatgagtgagatgattcata 417  Q
    ||||| || ||||||||||| | ||| |||||||||||| ||| |||||| |||||||||||| ||||||| || |||||    
T  12158005 taatgtgtcatatgtgagtttatattctatattggatgcaagattagatggtgagaaaaatataagtgagaagactcata 12158084  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 338 - 400
Target Start/End: Original strand, 6911122 - 6911184
Alignment:
Q  338 taatgcgttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatat 400  Q
    ||||| || ||||||||||| | |||||||||||||||| ||| |||||| ||||||||||||    
T  6911122 taatgtgtcatatgtgagtttatattttatattggatgcaagattagatggtgagaaaaatat 6911184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 345 - 401
Target Start/End: Complemental strand, 39403500 - 39403444
Alignment:
Q  345 ttatatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatatg 401  Q
    |||| ||||||||||| ||| | ||||||||| ||| ||||||||||||||||||||    
T  39403500 ttatttgtgagttaaagtttcagattggatgcaagagtagatgatgagaaaaatatg 39403444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 400
Target Start/End: Complemental strand, 22679250 - 22679197
Alignment:
Q  347 atatgtgagttaaaattttatattggatgcgagaatagatgatgagaaaaatat 400  Q
    ||||||||||| | ||||||||||| |||| ||| |||||| ||||||||||||    
T  22679250 atatgtgagtttatattttatattgcatgcaagattagatggtgagaaaaatat 22679197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1750 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold1750
Description:

Target: scaffold1750; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 250 - 210
Alignment:
Q  443 gaagatgtgatgtgaatctcacttttgtgactgatcttagt 483  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  250 gaagatgtgatgtgaatctcacttctgtgattgttcttagt 210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 20934963 - 20934923
Alignment:
Q  443 gaagatgtgatgtgaatctcacttttgtgactgatcttagt 483  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  20934963 gaagatgtgatgtgaatctcacttatgtgattgttcttagt 20934923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 32976437 - 32976397
Alignment:
Q  443 gaagatgtgatgtgaatctcacttttgtgactgatcttagt 483  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  32976437 gaagatgtgatgtgaatctcacttctgtgattgttcttagt 32976397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 20306699 - 20306659
Alignment:
Q  443 gaagatgtgatgtgaatctcacttttgtgactgatcttagt 483  Q
    |||||||||||||||||||||||| ||||| || |||||||    
T  20306699 gaagatgtgatgtgaatctcacttctgtgattgttcttagt 20306659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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