View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_20 (Length: 490)
Name: NF13864_low_20
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 19 - 482
Target Start/End: Complemental strand, 43583637 - 43583174
Alignment:
| Q |
19 |
aggagattgtctataaaacccttcatttcttccactgaactgtctttgtggaattggttgaactgatatcattccttgaggtacagaaagagatgctgga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583637 |
aggagattgtctataaaacccttcatttcttccactgaactgtctttgtggaattggttgaactgatatcattccttgaggtacagaaagagatgctgga |
43583538 |
T |
|
| Q |
119 |
ggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagaga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583537 |
ggaggtggagagatatcagcgagggaatagcgaagaagatcggtgttagcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagaga |
43583438 |
T |
|
| Q |
219 |
tggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcatt |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
43583437 |
tggctcctacacatccataaactggatccctaactcgtgcttcggcttcataagcaagggagttcacagcatcctccctttggtgagggagaagttcatt |
43583338 |
T |
|
| Q |
319 |
gagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggc |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43583337 |
gagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggc |
43583238 |
T |
|
| Q |
419 |
atgcattttctcctcaagaatttgcaggcagcacaaggtgaattgtatgagctggatgatgatg |
482 |
Q |
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| T |
43583237 |
atgcattttctcctcaagaatttgcaggcagcacaaggtgaattgtatgagctggatgatgatg |
43583174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 407
Target Start/End: Original strand, 32513111 - 32513188
Alignment:
| Q |
330 |
tgacattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaaga |
407 |
Q |
| |
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||||||||||||||||||| | |||||| || || |||||||| |||||||| || | |||||||||||| ||||||| |
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| T |
32513111 |
tgacattgctagcaccaaagactttgtgaacattagcaaatttgtgaggctcatcagcagggaagtaaggagcaaaga |
32513188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 147 - 479
Target Start/End: Complemental strand, 34675520 - 34675188
Alignment:
| Q |
147 |
agcgaagaagatcggtgttggcagcgtcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatc |
246 |
Q |
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||||||||||||||| || |||| || |||||||||||||| || ||||||||||| || || |||||||| || || ||||| |||||||| ||||| |
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| T |
34675520 |
agcgaagaagatcggcattagcagaatcaagttccttttgaagtctctgaacttgtctctgaaggaaagagatagcaccaacacaaccataaacaggatc |
34675421 |
T |
|
| Q |
247 |
cctaactcgtgcttcggcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcacca |
346 |
Q |
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|| || ||||| |||||||| ||||||||||| ||||| ||||| || || ||||||||||||||||| ||||| | ||||||||| ||||| || || |
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| T |
34675420 |
tctcacacgtgcctcggcttcataagcaagggaattcactgcatcttctctctggtgagggaggagttcgttgaggatctttgtgacgttgcttgcgccg |
34675321 |
T |
|
| Q |
347 |
aatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcagg |
446 |
Q |
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|| || ||||| |||||||||||||||||||| ||||| || || ||||| |||||||||||||| |||||||||||||||| | | ||||||||||| |
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| T |
34675320 |
aagatcttgtgaacgtttgcaaatttttgaggttcttccggtggaaagtatggtgcaaagatgcagcctggcatgcattttcgacgaaggaatttgcagg |
34675221 |
T |
|
| Q |
447 |
cagcacaaggtgaattgtatgagctggatgatg |
479 |
Q |
| |
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| ||||| ||||||||||||||||| ||||||| |
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| T |
34675220 |
ctgcacatggtgaattgtatgagcttgatgatg |
34675188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 462
Target Start/End: Original strand, 12360614 - 12360900
Alignment:
| Q |
176 |
agttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaagcaa |
275 |
Q |
| |
|
||||||||||| ||||| |||||||||||| || | || ||||| || || || |||||||||||||| | | | ||| || ||||| ||||||| |
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| T |
12360614 |
agttccttttggagcctaataacttgtctttggaggactgaaatggcaccgacgcaaccataaactggatcttttatccttgcctcagcttcataagcaa |
12360713 |
T |
|
| Q |
276 |
gggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaatttttg |
375 |
Q |
| |
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| |||||||| ||||| |||||||| || || | | |||||| ||||| || | |||||||| ||||||||||||||||| || |||||||||||||| |
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| T |
12360714 |
gagagttcactgcatcttccctttgatgtggttgcacttcattcagaagtttacttacattgcttgcaccaaatattttgtgaacatttgcaaatttttg |
12360813 |
T |
|
| Q |
376 |
aggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcctcaagaatttgcaggcagcacaaggtgaatt |
462 |
Q |
| |
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|| |||||||| ||||| || || ||||| ||||| |||||||||| || || ||||| || ||||| |||||||| |||||||| |
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| T |
12360814 |
tggttcttctggtgggaaatatggagcaaatatgcaatctggcatgcacttccttctcaaaaacttgcaagcagcacatggtgaatt |
12360900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 173 - 411
Target Start/End: Complemental strand, 591411 - 591173
Alignment:
| Q |
173 |
tcgagttccttttgaagcctttgaacttgtctttgtagaaaagagatggctcctacacatccataaactggatccctaactcgtgcttcggcttcgtaag |
272 |
Q |
| |
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|||||||||||||||||| | | | ||||||||| || | ||| || ||||| ||||| ||||| |||||||| ||| | |||||| ||||| |||| |
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| T |
591411 |
tcgagttccttttgaagcttaaggagttgtctttgaagcacagatatagctccaacacaaccatacactggatctttaatccttgcttcagcttcataag |
591312 |
T |
|
| Q |
273 |
caagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgtttgcaaattt |
372 |
Q |
| |
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| || || ||||| | ||| || ||||| || || | | |||||| |||| || | ||||| || ||||||||||||||||| || |||||||| || |
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| T |
591311 |
ctagagaattcaccgtatcttctctttgatggggtaaaacttcatttagaattttgctaacattacttgcaccaaatattttgtgaacatttgcaaactt |
591212 |
T |
|
| Q |
373 |
ttgaggctcttctggagggaagtaaggtgcaaagatgca |
411 |
Q |
| |
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|||||||||||||| ||||| ||||||||||| ||||| |
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| T |
591211 |
atgaggctcttctggtgggaaataaggtgcaaaaatgca |
591173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 462
Target Start/End: Complemental strand, 600829 - 600699
Alignment:
| Q |
332 |
acattgctagcaccaaatattttgtgcacgtttgcaaatttttgaggctcttctggagggaagtaaggtgcaaagatgcatcctggcatgcattttctcc |
431 |
Q |
| |
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|||||||| ||||||||||||||||| || || ||||||| |||||||||||||| ||||| ||||||||||| ||||| || | |||||||||| | |
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| T |
600829 |
acattgcttgcaccaaatattttgtgaacattgacaaatttatgaggctcttctggtgggaaataaggtgcaaaaatgcaatcttggttgcattttcttc |
600730 |
T |
|
| Q |
432 |
tcaagaatttgcaggcagcacaaggtgaatt |
462 |
Q |
| |
|
| | ||| ||||| |||||||| || ||||| |
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| T |
600729 |
ttaggaacttgcaagcagcacatggagaatt |
600699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 263 - 405
Target Start/End: Complemental strand, 15262785 - 15262643
Alignment:
| Q |
263 |
gcttcgtaagcaagggagttcacagcatcctccctttggtgagggaggagttcattgagaagctttgtgacattgctagcaccaaatattttgtgcacgt |
362 |
Q |
| |
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||||| |||||||| || ||||||||||| || | |||||||||| | | ||||||||||||||||| |||||||| || ||||| ||| | || || | |
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| T |
15262785 |
gcttcataagcaagtgaattcacagcatcttcacgttggtgagggtgtaaatcattgagaagctttgtaacattgcttgctccaaaaattctatgaacat |
15262686 |
T |
|
| Q |
363 |
ttgcaaatttttgaggctcttctggagggaagtaaggtgcaaa |
405 |
Q |
| |
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||||||||||||| |||| || || || || ||||||||||| |
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| T |
15262685 |
ttgcaaatttttgtggctgatcaggtggaaaataaggtgcaaa |
15262643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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