View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_21 (Length: 453)
Name: NF13864_low_21
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 16 - 434
Target Start/End: Complemental strand, 29060044 - 29059618
Alignment:
| Q |
16 |
aatatgcataagtgtgattaattccaaacaatgaaacagtttaaataacggaaagtatagagattattaagcttgacaaatttcaatcataatcatcgat |
115 |
Q |
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| T |
29060044 |
aatatgcataagtgtgattaattctaaacaatgaaacagtttaaataacggaaagtatagagattattaagcttgacaaatttcaatcataatcatcgat |
29059945 |
T |
|
| Q |
116 |
tattttccatgcagtttaaacaagatgcattttaaaatatgcatcgat---tagtgctaccaagtgaatctaaaagatggcccaaaaccatgtgtaagct |
212 |
Q |
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| T |
29059944 |
tatttttcatgcagtttaaacaagatgcattttaaaatatgcatagataattagtgctaccaagtgaatctaaaagatggcccaaaaccatgtgtaagat |
29059845 |
T |
|
| Q |
213 |
gaatgctttcataattctcaattgtcctgttccatttgattctgatgtgtcaatgtataagttaagaatttgcaactcaaagaagatgttgacagacaca |
312 |
Q |
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| T |
29059844 |
gaatgctttcataattctcaattgtcctgttccatttgattctgatgtgtcaatgtacaagttaagaattcgcaactcaaagaagatgttgacagacaca |
29059745 |
T |
|
| Q |
313 |
aaccttgtttttatggggagtttcattgaaacacatactcaacatta-----cattccaattcattccatgacaaacaaagtatgaacataatgatttat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29059744 |
aaccttgtttttatggggagtttcattgaaacacatactcaacattacattacattccaattcattccatgacaaacaaagtatgaacataatgatttat |
29059645 |
T |
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| Q |
408 |
aggctagattgcacctagtgtctcagc |
434 |
Q |
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| T |
29059644 |
aggctagattgcacctagtgtctcagc |
29059618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 11 - 63
Target Start/End: Complemental strand, 29061758 - 29061706
Alignment:
| Q |
11 |
cgaagaatatgcataagtgtgattaattccaaacaatgaaacagtttaaataa |
63 |
Q |
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|||| ||||||| ||||||||| ||||||||||||||| |||||||||||||| |
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| T |
29061758 |
cgaacaatatgcgtaagtgtgaataattccaaacaatggaacagtttaaataa |
29061706 |
T |
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