View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_24 (Length: 430)
Name: NF13864_low_24
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 40505169 - 40505575
Alignment:
| Q |
9 |
gaaaagaaaattgattaaccttcaacaagttacatgatagcaatcaccaaggccgttttatagcaagttgagaaccaccgagtacatgtttggattgacg |
108 |
Q |
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| T |
40505169 |
gaaaagaaaattgattaaccttcaacaagttacatgatagcaatcaccaaggcctttttatagcaagttgagaaccaccaagtacatgtttggattgacg |
40505268 |
T |
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| Q |
109 |
gtgagattggcagaaccatggcgagtcaacgtaattttagcaaaagttgcacattggagtggtgaaccaccgtgattttatcgatctaacggtctatgta |
208 |
Q |
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| T |
40505269 |
gtgagattgacagaaccatggtgagtcaacgtaattttagcaaaagttgcacattggagtggtgaactaccgtgattttatcgatctaatggtctatgta |
40505368 |
T |
|
| Q |
209 |
aacaaacactaattattagcataatgtatgaaaagagaataac-agtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatagaacagga |
307 |
Q |
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| T |
40505369 |
aacaaacactaattattagcataatgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatagaacagga |
40505468 |
T |
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| Q |
308 |
atagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgttgattgg |
407 |
Q |
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| T |
40505469 |
atagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgttgattgg |
40505568 |
T |
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| Q |
408 |
tgcttga |
414 |
Q |
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| T |
40505569 |
tgcttga |
40505575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 202 - 414
Target Start/End: Original strand, 22137854 - 22138066
Alignment:
| Q |
202 |
ctatgtaaacaaacactaattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatag |
300 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22137854 |
ctatgtaaacaaacactaattattagcata-tgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatag |
22137952 |
T |
|
| Q |
301 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgt |
400 |
Q |
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| T |
22137953 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgt |
22138052 |
T |
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| Q |
401 |
tgattggtgcttga |
414 |
Q |
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| T |
22138053 |
tgattggtgcttga |
22138066 |
T |
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