View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_28 (Length: 413)
Name: NF13864_low_28
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 399
Target Start/End: Complemental strand, 40652153 - 40651748
Alignment:
| Q |
1 |
tactgcatgataatgcataatggtgatttgtttgcgacagctttgaccgtgagttatgaaaaagaatgttacactgccttattttcctaacctggttaga |
100 |
Q |
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| T |
40652153 |
tactgcatgataatgtataatggtgatttgtttgcgacagctttgaccgtgagttatgaaaaagaatgttacactgtcttattttcctaacctggttaga |
40652054 |
T |
|
| Q |
101 |
gtttattatgtattttatgaactgattgatgattaaagttctggattacgaacgattaatcatattcaagtattgaaattctactcttgaaatatgacct |
200 |
Q |
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| T |
40652053 |
gtttattatgtattttatgaactgattgatgattaaagttctggattatgaacgattaatcatattcaagtattgaaattctactcttgagatatgacct |
40651954 |
T |
|
| Q |
201 |
ttacccactattagagaaatccaaccgaaacattttattcaaacaagatatctacaattgaatccccttccttttgaatacatcagttagaaacagttac |
300 |
Q |
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| T |
40651953 |
ttacccactattagagaaatccaaccgaaacattttattcaaacaggatatctacaattgaatccccttccttttgaatacatcagttagaaacagttac |
40651854 |
T |
|
| Q |
301 |
a-------acactattaaaaataacatgctaactttgttctagaatacactttagttttgggacttgtagctnnnnnnnncattgaaatcttacctgaac |
393 |
Q |
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| T |
40651853 |
agcaatttccactattaaaaataacatgctaactttgttctagaatacactttagttttgggacttgtagctaaaaaaaacattgaaatcttacctgaac |
40651754 |
T |
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| Q |
394 |
catctt |
399 |
Q |
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|||||| |
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| T |
40651753 |
catctt |
40651748 |
T |
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