View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13864_low_30 (Length: 406)
Name: NF13864_low_30
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_30 |
 | |
|
| [»] chr6 (22 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0294 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr4 (10 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 235; Significance: 1e-130; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 92 - 406
Target Start/End: Complemental strand, 5176245 - 5175931
Alignment:
| Q |
92 |
tataatatgacatgcgaaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5176245 |
tataatatgacatgcgaaaaactaaaatcataattaatacctgagtcgcttcccacacaacttcgacattgctgttttctaactcgatggaaactaaatt |
5176146 |
T |
|
| Q |
192 |
tccttgataaaactttgtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgt |
291 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
5176145 |
tccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgc |
5176046 |
T |
|
| Q |
292 |
acaccatcgaattgaagcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccct |
391 |
Q |
| |
|
|||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
5176045 |
acaccagcaagttgaagcaacctgagtttcttcatgttctcaaatgctttagtactataacatttcgcactatctcttggcaacttcaaagtcaatccct |
5175946 |
T |
|
| Q |
392 |
caacagcttttgttc |
406 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5175945 |
caacagcttttgttc |
5175931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 92 - 406
Target Start/End: Complemental strand, 5278072 - 5277758
Alignment:
| Q |
92 |
tataatatgacatgcgaaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatt |
191 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5278072 |
tataatatgacatgcgaaaaactaaaatcataattaatacctgagtcgcttcccacacaacttcgacattgctgttttctaactcgatggaaactaaatt |
5277973 |
T |
|
| Q |
192 |
tccttgataaaactttgtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgt |
291 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||| || |
|
|
| T |
5277972 |
tccttgataaaagcttgaaggaatgcatgataaaggaaatccattccaagaaagccatctcagatttcttgaaagatactcaaaatccccatcaagttgc |
5277873 |
T |
|
| Q |
292 |
acaccatcgaattgaagcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccct |
391 |
Q |
| |
|
|||||| | | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
5277872 |
acaccagcaagttgaagcaaactgagtttcttcatgttctcaaatgctttagtactataacatttcgcactatctcttggcaacttcaaagtcaatccct |
5277773 |
T |
|
| Q |
392 |
caacagcttttgttc |
406 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
5277772 |
caacagcttttgttc |
5277758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 98 - 406
Target Start/End: Complemental strand, 5432785 - 5432477
Alignment:
| Q |
98 |
atgacatgcgaaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttg |
197 |
Q |
| |
|
||||||||| |||| |||||||||| ||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
5432785 |
atgacatgcaaaaacataaaatcaaacctaatacctgggtctctttccacaaatctttgacattactgttttctaactcgatggaaactaaatttgcttg |
5432686 |
T |
|
| Q |
198 |
ataaaactttgtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacacca |
297 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||| |||||| |||||| |
|
|
| T |
5432685 |
ataaaagtttgtaggtatgcatgataacggaaatccattccaagaaagccatctcagatttcttgaaagatgttcaaaattcccatcaagctgcacacca |
5432586 |
T |
|
| Q |
298 |
tcgaattgaagcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacag |
397 |
Q |
| |
|
| | || ||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
5432585 |
gcaagttcaagcaatctgagtttcttcatcttcttaaatgcaacagtactataacattttgcactatctcttggcaacttcaaagtcaatccctcaatag |
5432486 |
T |
|
| Q |
398 |
cttttgttc |
406 |
Q |
| |
|
||||||||| |
|
|
| T |
5432485 |
cttttgttc |
5432477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 125 - 406
Target Start/End: Original strand, 5074418 - 5074699
Alignment:
| Q |
125 |
ttaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgataa |
224 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||||| ||| ||| ||||||| ||| |
|
|
| T |
5074418 |
ttaatacctgggtctttttccacacaagtttgatattgctgtttactaactcaatggaaactaaatttccttgataaaagcttgaaggaatgcatgttaa |
5074517 |
T |
|
| Q |
225 |
aggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttc |
324 |
Q |
| |
|
||||||||||||||| |||||||| |||| |||||||||||||| |||||||| |||| ||| ||||||||| | | ||||||||||| ||||| | | |
|
|
| T |
5074518 |
aggaaatccattccatgaaagccatctcaaatttcttgaaagatgttcaaaatccccatcaagttgtacaccagcaagttgaagcaatcgaagtttttcc |
5074617 |
T |
|
| Q |
325 |
atgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|| |||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5074618 |
atcttcttaaatgctttagtactaaaacattttgcattttctcttggcaacttcaaagccaatccctcaacaacttttgttc |
5074699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 116 - 406
Target Start/End: Original strand, 5147592 - 5147882
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||||| |||||||||||||||||| ||||||| |||| ||||| |
|
|
| T |
5147592 |
aaatcaaaattaatacctgggtttctttccacagaagtttgatattgctattttctaactcaatggaaactaaatttcctagataaaagcttgtgggtat |
5147691 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
||||| || |||||||||||||||||||||||| ||||||||||| |||| || |||||||| |||| ||| ||||| ||| | |||||||||||| |
|
|
| T |
5147692 |
gcatgttagaggaaatccattccaagaaagccatctcagatttctcgaaatgtattcaaaatccccatcaagttgtactccagtaagttgaagcaatctc |
5147791 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| | |||| |||| |||||||||||||||| ||||||||| |||| | |||||||||||||| | | |||||||| ||||||||| |
|
|
| T |
5147792 |
agtcttgtcatcttcttaaatgctttagtactaaaacattttgaactagatattggcaacttcaaaactagcgcctcaacaacttttgttc |
5147882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 119 - 406
Target Start/End: Complemental strand, 5342987 - 5342700
Alignment:
| Q |
119 |
tcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgca |
218 |
Q |
| |
|
||||||||||||||| | |||||||||||| || ||||||| |||||||||| ||||| |||||||||||||||||||||| ||| ||| |||||||||| |
|
|
| T |
5342987 |
tcaaaattaataccttgttctctttccacagaagtttgacactgctgttttcaaactccatggaaactaaatttccttgatcaaagtttttaggtatgca |
5342888 |
T |
|
| Q |
219 |
tgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagt |
318 |
Q |
| |
|
| ||||||||||||||||||| | ||||| || || ||||| |||||||| |||||||| |||| ||| ||||| ||| | |||||||||||| ||| |
|
|
| T |
5342887 |
tcttaaaggaaatccattccaacatagccatcttagttttctagaaagatagtcaaaatctccatcaagttgtacgccagaaagttgaagcaatcttagt |
5342788 |
T |
|
| Q |
319 |
ttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|| ||||| || |||||||||||||| ||| ||| |||||| | || || ||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
5342787 |
ttattcatcttttcaaatgctttagttctaaaacgatttgcatcaccttttagcaacttcaaagccagtccctcaacagcttgtgttc |
5342700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 108 - 391
Target Start/End: Original strand, 5355318 - 5355601
Alignment:
| Q |
108 |
aaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaacttt |
207 |
Q |
| |
|
||||| |||||| ||||||| |||||||| ||||||||||| || |||||||||||| || |||||||| |||||||||||||||||| || ||| ||| |
|
|
| T |
5355318 |
aaaaaataaaataaaaattactacctgggcctctttccacataagtttgacattgctattctctaactctatggaaactaaatttcctagaaaaaggttt |
5355417 |
T |
|
| Q |
208 |
gtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaa |
307 |
Q |
| |
|
|| ||||| || |||||||||| |||||||||| ||||| |||||||||||||||||| | ||||||| |||| ||| | ||| ||| | | | ||| |
|
|
| T |
5355418 |
gttggtatatgtgttaaaggaaattcattccaagacagccacctcagatttcttgaaagacattcaaaatttccatcaagttttactccagcaagtagaa |
5355517 |
T |
|
| Q |
308 |
gcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccct |
391 |
Q |
| |
|
||||| | ||| ||||||| |||| |||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
5355518 |
gcaatttcagtctcttcatcttcttaaatgctttagtactaaaacattttgcatcaactcttggcaacttcaaagccaatccct |
5355601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 124 - 406
Target Start/End: Original strand, 5182583 - 5182865
Alignment:
| Q |
124 |
attaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgata |
223 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||| | | ||| |||||| | |
|
|
| T |
5182583 |
attaatacctggggctctttccacacaactttaacattgctgtttactaactcaatggaaactaaattttcttgataaaaactcgaaggaatgcatttca |
5182682 |
T |
|
| Q |
224 |
aaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttctt |
323 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| ||||| || || | ||| ||||||| | | | |||||||| ||| ||||| || |
|
|
| T |
5182683 |
aaggaaatccattccaagaaagccatatcagatttcttgaaagatattcaaagtccccctcaagttgtacactagcaagttgaagcagtctaagtttttt |
5182782 |
T |
|
| Q |
324 |
catgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| | || |||||||| |||||| | |||||| || | || ||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
5182783 |
catctccttgaatgctttggtactaaagcattttccatttgctgttggcaatttcaaagctaatccctcaacagcttttgttc |
5182865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 123 - 406
Target Start/End: Complemental strand, 5396409 - 5396126
Alignment:
| Q |
123 |
aattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgat |
222 |
Q |
| |
|
|||||||||||||| |||| ||||||| |||||||||||||||| ||||||| |||||||||||||| || |||||||| ||| ||| |||||| | |
|
|
| T |
5396409 |
aattaatacctggggatcttcccacacatgtttgacattgctgtttactaactcaatggaaactaaattcccctgataaaagcttgaaggaatgcatttt |
5396310 |
T |
|
| Q |
223 |
aaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttct |
322 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||| |||| |||| | | |||||||| ||||||||| | |
|
|
| T |
5396309 |
aaaggaaatgcattccaagaaagccatctcacatttcttgaaagatattcaaaatcaccatcaagttgtaaaccagcaagttgaagcagtctgagttttt |
5396210 |
T |
|
| Q |
323 |
tcatgttctcaaatgctttagtactataacattttgca-ctatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||| |||| |||||||| |||||| | |||||| || || | | ||||||| |||||||| | |||||||||||||||||||| |
|
|
| T |
5396209 |
tcatcttcttgaatgctttggtactaaagcatttttcatctgt-tgttggcaatttcaaagctagtccctcaacagcttttgttc |
5396126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 116 - 385
Target Start/End: Complemental strand, 5349602 - 5349333
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| | || ||||||| ||| || |||||||||||||||||||||||| || |||||| |||| |||||| |
|
|
| T |
5349602 |
aaatcaaaacttatacctgggcctctttccataaaagtttgacacggctattctctaactcgatggaaactaaattttctctataaaagtttgcaggtat |
5349503 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| |||| | |||| |||||||||||||| ||||||||| |||||||||| |||||||| |||| ||| | ||| ||| | | ||||||||||||| |
|
|
| T |
5349502 |
atgtggtaaacaacatccgttccaagaaagccatctcagattttttgaaagatattcaaaatctccatcaagttttaccccagcaagttgaagcaatctg |
5349403 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagcca |
385 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
5349402 |
agtctcttcatcttcttgaatgctttagtactaaaacatttttcattagctcttggcaacttcaaagcca |
5349333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 116 - 406
Target Start/End: Complemental strand, 5095394 - 5095104
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| | ||||||||| ||||||||| | || |||||||||||| || ||||||||||||||||| || |||||| ||||| ||||||||||| |
|
|
| T |
5095394 |
aaatcaaaacttatacctgggcctctttccataaaagtttgacattgctattctctaactcgatggaaaccaagcttcctttgtaaaagtttgtaggtat |
5095295 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| ||||| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| ||| | || ||| | | ||||||||||||| |
|
|
| T |
5095294 |
atgtgttaaagaaaatccattccaagacagccatctcagatttctcgaaagatattcaaaatctccatcaagtttaaccccagcaagttgaagcaatctg |
5095195 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| || |||| |||| ||||||||||||||| |||||||| || | ||||||| |||||||||| || |||| || ||||||||||| |
|
|
| T |
5095194 |
agtctcgtcatcttcttgaatgctttagtactaaaacatttttcattggctcttgggaacttcaaagtcagccccttaatagcttttgttc |
5095104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 93 - 406
Target Start/End: Complemental strand, 5382994 - 5382681
Alignment:
| Q |
93 |
ataatatgacatgcgaaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaattt |
192 |
Q |
| |
|
||||| ||| |||| |||||| |||||| |||||||||||||||||||||||||||| | | | || |||||||||||||| ||||||||||||||| |
|
|
| T |
5382994 |
ataatgtgaaatgcaaaaaacagaaatcataattaatacctgggtctctttccacacagatatcattttactgttttctaactctatggaaactaaattt |
5382895 |
T |
|
| Q |
193 |
ccttgataaaactttgtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgta |
292 |
Q |
| |
|
| |||| |||| |||| ||||||| |||||||||||||||| |||||| | || || || || |||| ||||||||||| ||||| |||| ||| |||| |
|
|
| T |
5382894 |
ctttgacaaaagtttgaaggtatgaatgataaaggaaatcctttccaacacagtcatcttagttttcctgaaagatacttgaaatctccatcaagttgta |
5382795 |
T |
|
| Q |
293 |
caccatcgaattgaagcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctc |
392 |
Q |
| |
|
| ||| | | |||||||||||| ||| | | ||| |||| ||||| |||||| || ||||||||| |||| | |||| ||||||||||| | ||||| |
|
|
| T |
5382794 |
ctccagcaagttgaagcaatcttagtctttccatcttcttaaatgttttagtgttaaaacattttgaactagttattggtaacttcaaagctagaccctc |
5382695 |
T |
|
| Q |
393 |
aacagcttttgttc |
406 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5382694 |
aacagcttttgttc |
5382681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 116 - 385
Target Start/End: Complemental strand, 5424978 - 5424709
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| | |||||||| |||||||||| || || ||||| ||| || |||||||||||||||||||||| | || |||||| ||||||||||| |
|
|
| T |
5424978 |
aaatcaaaagttatacctggccgtctttccacaaaagttggacatggctattctctaactcgatggaaactaaatgttctctataaaagtttgtaggtat |
5424879 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| ||||| | ||||||||||||| ||||| ||||||||||| |||||||| | |||||| |||||||| | ||| ||| | | ||||||||||||| |
|
|
| T |
5424878 |
atgtggtaaagaacatccattccaagacagccatctcagatttctcgaaagatatttaaaatctccattaagttttaccccagcaagttgaagcaatctg |
5424779 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagcca |
385 |
Q |
| |
|
||| || |||| |||| ||||||||||||||| |||||||| || || ||||||||||||||||||||| |
|
|
| T |
5424778 |
agtctcgtcatcttcttgaatgctttagtactaaaacatttttcattagctcttggcaacttcaaagcca |
5424709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 116 - 385
Target Start/End: Original strand, 5067850 - 5068119
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| | ||||||||| | ||||||| | || |||||||||||| || |||||||||||||||||||||||| || |||||| ||| |||||| |
|
|
| T |
5067850 |
aaatcaaaacttatacctgggccactttccataaaagtttgacattgctattctctaactcgatggaaactaaattttctctataaaagttttcaggtat |
5067949 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| |||| | ||||||||||||| ||||| |||||||||| |||||||| |||||||| |||| ||| | ||| ||| | | ||||||||||||| |
|
|
| T |
5067950 |
atgtggtaaacaacatccattccaagacagccatatcagatttctcgaaagatattcaaaatctccatcaaggtttaccccagcaagttgaagcaatctg |
5068049 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagcca |
385 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| |||||||| || || |||||||||||||||||||| |
|
|
| T |
5068050 |
agtctcttcatcttcttgaatgctttagtactaaaacatttttcattagatcttggcaacttcaaagcca |
5068119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 116 - 391
Target Start/End: Original strand, 5132584 - 5132862
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||| ||| || |||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||| || || |||||| | ||||||||| |
|
|
| T |
5132584 |
aaatcgaaagtagtacctgggcctccttccacacacgtttgacattgctattttctaactcgatggaaactaaactttctctataaaaatctgtaggtat |
5132683 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| ||||||||||||||||||| | | ||| || |||||||||||||| |||||||| |||| ||| | ||| ||||| | ||||||||||||| |
|
|
| T |
5132684 |
atgtgttaaaggaaatccattccaacacaaccatcttagatttcttgaaaggatttcaaaatctccatcaagttttaccccatcaagttgaagcaatctg |
5132783 |
T |
|
| Q |
316 |
ag---tttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccct |
391 |
Q |
| |
|
|| || |||| | || |||||||||||||||| |||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
5132784 |
agcctcgtcgtcatctccttaaatgctttagtactaagacattttgcattagctcttggcaacttcaaagccaacccct |
5132862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 119 - 395
Target Start/End: Original strand, 5690808 - 5691084
Alignment:
| Q |
119 |
tcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgca |
218 |
Q |
| |
|
||||||| | |||||| | || |||||| | || |||||| ||||||||||||||||| | |||||||||||||||||||||||| ||| ||| ||| | |
|
|
| T |
5690808 |
tcaaaatcattacctgtgcctttttccatagaaatttgacgttgctgttttctaactcaagggaaactaaatttccttgataaaagcttgaagggatgga |
5690907 |
T |
|
| Q |
219 |
tgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagt |
318 |
Q |
| |
|
|| |||||||||||||| |||||||| ||| ||||||||| ||||||| | ||||||| |||| ||| | ||| ||| | | ||||| |||||| ||| |
|
|
| T |
5690908 |
tgttaaaggaaatccatcccaagaaaaccatctcagattttttgaaagtttatcaaaattcccatcaagttctactccagcaagttgaaacaatctcagt |
5691007 |
T |
|
| Q |
319 |
ttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaac |
395 |
Q |
| |
|
|| | ||| ||||||||||||| |||| || |||||| | || || ||||||||||||||||| || ||||||||| |
|
|
| T |
5691008 |
ttttccatcttctcaaatgcttcagtattaaaacattgtacattagctcttggcaacttcaaactcagtccctcaac |
5691084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 128 - 406
Target Start/End: Complemental strand, 5369698 - 5369420
Alignment:
| Q |
128 |
atacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgataaagg |
227 |
Q |
| |
|
||||||||| ||||||||| | | |||||||| ||| || |||||||||||||||||||||||| || | | || ||||| ||||| || |||| |
|
|
| T |
5369698 |
atacctgggcctctttccataatagtttgacatggctattctctaactcgatggaaactaaattttctctacacaaatttgttggtatatgtgctaaaca |
5369599 |
T |
|
| Q |
228 |
aaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttcatg |
327 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||| |||||||| |||||||| |||| ||| | ||| ||| | | ||| |||||||||||||| ||||| |
|
|
| T |
5369598 |
aaatccattccaagacagccatctcagatttctggaaagatattcaaaatctccatcaagttttaccccagcaagttggagcaatctgagtttgttcatc |
5369499 |
T |
|
| Q |
328 |
ttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||| ||||||||||| ||| ||| |||| || || |||||||||||||||| |||| |||| || ||||||||||| |
|
|
| T |
5369498 |
ttcttgaatgctttagtgctaaaacgtttttcattagctcttggcaacttcaacgccagccccttaatagcttttgttc |
5369420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 406
Target Start/End: Original strand, 5103603 - 5103893
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| || ||||||| ||||||||| | || |||||||||| || | |||||||||||||||||||||| || || ||| || ||||||| |
|
|
| T |
5103603 |
aaatcaaaactattacctggtcctctttccataaaagactgacattgctattctgtaactcgatggaaactaaattttctctatgaaagttattaggtat |
5103702 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| ||||| ||||||||||||||| ||| | |||||||||| |||||||| |||||||| |||| ||| | ||| ||| | |||||||| ||| |
|
|
| T |
5103703 |
atgtgttaaagaaaatccattccaagacagcaatttcagatttctcgaaagatattcaaaatctccatcaagttttactccagaaagttgaagcagtcta |
5103802 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| ||||||| |||| ||||||||||||||| |||||||| || | |||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
5103803 |
agtctcttcatcttcttgaatgctttagtactaaaacatttttcattggatcttggcaacttcaaagccagtcccttaatagcttttgttc |
5103893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 116 - 406
Target Start/End: Original strand, 5158200 - 5158490
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
||||||||| | ||||||||| |||||||| | || ||||| |||||| || |||||||||||||||||||||||| || |||||| ||||||||||| |
|
|
| T |
5158200 |
aaatcaaaacttatacctgggcttctttccataaaagtttgatattgctattctctaactcgatggaaactaaattttctatataaaagtttgtaggtat |
5158299 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
|| | ||| ||||| ||||||||| ||||| |||||| |||| |||| ||| | |||||| ||| ||| | || ||| | | |||||||||||| |
|
|
| T |
5158300 |
atgtgttgaagaaaatctattccaagacagccatctcagacttctcgaaatatatttaaaatctccaacaagtttgaccccagcaagttgaagcaatcta |
5158399 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| ||||||| |||| |||||||||||||| |||||||| || || ||||| ||||||||||||||| |||| || || |||||||| |
|
|
| T |
5158400 |
agtctcttcatcttcttgaatgctttagtactgaaacatttttcattagctctttgcaacttcaaagccagccccttaatagtttttgttc |
5158490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 107 - 382
Target Start/End: Original strand, 5260801 - 5261070
Alignment:
| Q |
107 |
gaaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactt |
206 |
Q |
| |
|
|||||||||||||||||| ||||||| ||| | ||||||| | |||||||||| |||| |||||||||||||||||||||||| || ||| || || |
|
|
| T |
5260801 |
gaaaaactaaaatcaaaagtaataccacggtgttcttccacagacgtttgacattgatgttctctaactcgatggaaactaaattttctccatagaagtt |
5260900 |
T |
|
| Q |
207 |
tgtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattga |
306 |
Q |
| |
|
|||||||||| || | ||||||||||| || ||| |||| || |||||||| ||| |||||||| |||| ||| | ||| || | | |||| |
|
|
| T |
5260901 |
tgtaggtatg--tg----acttaatccattccacgacagcagtctcaaatctcttgaaacatattcaaaatccccatcaagttttacttcagcaagttga |
5260994 |
T |
|
| Q |
307 |
agcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaag |
382 |
Q |
| |
|
||||||||||| ||||||| || |||||||||||||||||| ||||||||||| || || | ||||||||||||| |
|
|
| T |
5260995 |
agcaatctgagactcttcatcttttcaaatgctttagtactaaaacattttgcattagctttaggcaacttcaaag |
5261070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 108 - 390
Target Start/End: Complemental strand, 5446433 - 5446157
Alignment:
| Q |
108 |
aaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaacttt |
207 |
Q |
| |
|
||||||||||||||||| ||||||| | ||| ||||||| ||||| | |||||| || |||||||||||||||||||||||| || || | || ||| |
|
|
| T |
5446433 |
aaaaactaaaatcaaaagtaataccatgctcttcttccacagaacttccaaattgctattctctaactcgatggaaactaaattttctcgaaagaagttt |
5446334 |
T |
|
| Q |
208 |
gtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaa |
307 |
Q |
| |
|
||||| ||| ||| ||||||||| || ||||| | |||| ||| |||| ||| |||||||| |||| ||| | ||| || | | ||||| |
|
|
| T |
5446333 |
gtagggatgtcgcttaa------tccattccatgacagccatgttagatctctcgaaacatattcaaaatctccatcaagttttacctcagcaagttgaa |
5446240 |
T |
|
| Q |
308 |
gcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccc |
390 |
Q |
| |
|
| ||||||||| ||||||| || |||||||||||||||||| ||||||||||| || | | ||||| |||||||||| |||| |
|
|
| T |
5446239 |
gaaatctgagtctcttcatcttttcaaatgctttagtactaaaacattttgcattagttgtaggcaatttcaaagccagtccc |
5446157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 382
Target Start/End: Original strand, 5284989 - 5285068
Alignment:
| Q |
303 |
ttgaagcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaag |
382 |
Q |
| |
|
||||||||||||||| ||||||| || |||||||||||||||||| ||||||||||| || || | ||||||||||||| |
|
|
| T |
5284989 |
ttgaagcaatctgagactcttcatcttttcaaatgctttagtactaaaacattttgcattagctttaggcaacttcaaag |
5285068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 123 - 406
Target Start/End: Original strand, 36214533 - 36214816
Alignment:
| Q |
123 |
aattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgat |
222 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| ||| ||||||| | |
|
|
| T |
36214533 |
aattaatacctggggctcttcccacacatgtttgacattgctgttttctaactcaatggaaactaaattttcttgataaaagcttgaaggaatgcatgtt |
36214632 |
T |
|
| Q |
223 |
aaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttct |
322 |
Q |
| |
|
|||||||| ||||||||||||||||| |||| |||| |||||||||||||||| || |||| ||| ||||||||| | | |||||||||||||||| | | |
|
|
| T |
36214633 |
aaaggaaaaccattccaagaaagccatctcaaattttttgaaagatactcaaagtccccatcaagttgtacaccagcaagttgaagcaatctgagtcttt |
36214732 |
T |
|
| Q |
323 |
tcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||| |||| |||||||||||||||| | | |||| || | ||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
36214733 |
tcatcttcttaaatgctttagtactaaagcgttttccatttgttcttggcaatttcaaagccaaaccctcaacagcttttgttc |
36214816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 116 - 406
Target Start/End: Original strand, 9338 - 9628
Alignment:
| Q |
116 |
aaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | | | || |||||||||||||| |||||||||||||||| ||||||||| |||| |||||| |
|
|
| T |
9338 |
aaatcaaaattaatacctgggtctctttccacacaaatatcattttactgttttctaactcaatggaaactaaatttctttgataaaagtttgaaggtat |
9437 |
T |
|
| Q |
216 |
gcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctg |
315 |
Q |
| |
|
| ||| |||||||||||| |||||| | ||||| || || ||||||||||||||||| ||||| |||| ||| ||||| ||| | | |||||||||||| |
|
|
| T |
9438 |
gaatggtaaaggaaatcctttccaacacagccatcttagttttcttgaaagatactcgaaatctccatcaagttgtactccagcaagttgaagcaatctt |
9537 |
T |
|
| Q |
316 |
agtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||| ||| ||| |||||||||| || || |||| ||||||||| |||| | |||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
9538 |
agtctctccatcttctcaaatgattcagcactaaaacattttgaactagttattggcaacttcaaagctagtccctcaacagcttttgttc |
9628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 108 - 406
Target Start/End: Complemental strand, 8877224 - 8876926
Alignment:
| Q |
108 |
aaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaacttt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||| ||||||||||||||| |||||||||||||| || || |||||| |||||||||| | |
|
|
| T |
8877224 |
aaaaactaaaatcaaaattaatacctgaatttctttccacagaactttgacattgctattttctaactcgatagataccaaattttcttgataaaagtcg |
8877125 |
T |
|
| Q |
208 |
gtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaa |
307 |
Q |
| |
|
||||||||||| | |||||||||| |||||||||| | | | ||||||||| | |||||| | ||||| | |||| ||| ||||| || | | ||||| |
|
|
| T |
8877124 |
gtaggtatgcaggttaaaggaaatgcattccaagataacaatctcagatttttggaaagaaattcaaagtttccatcaagttgtacgccggcaagttgaa |
8877025 |
T |
|
| Q |
308 |
gcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||||||||||| ||||||| |||| |||||||||||||||| ||| ||||||| |||| |||||||||||| ||| | ||||||||| ||||||||| |
|
|
| T |
8877024 |
gcaatctgagtctcttcatcttcttaaatgctttagtactaaaacgttttgcatcatctattggcaacttcagagcaagaccctcaacaacttttgttc |
8876926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 122 - 406
Target Start/End: Complemental strand, 4344350 - 4344066
Alignment:
| Q |
122 |
aaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatga |
221 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||||||||||| |||||||||| ||||| |||||| || |||| ||||||||||| |
|
|
| T |
4344350 |
aaattaatacctgcatctctttccacacaagtttgacactgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatgc |
4344251 |
T |
|
| Q |
222 |
taaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttc |
321 |
Q |
| |
|
||| |||||||||||||| ||||| |||| ||||||||||||||| | |||||| |||| ||| ||||||||| | ||| |||||||| |||||| |
|
|
| T |
4344250 |
taacggaaatccattccagtgtagccatctcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctaagtttc |
4344151 |
T |
|
| Q |
322 |
ttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| || || |||| | ||||| ||| |||| || ||| |||||||||||||||| |
|
|
| T |
4344150 |
ttcatgttctcaaatgctttggtactaaaacgttgtgtactacgacctggcatcttaaaagtcagtccttcaacagcttttgttc |
4344066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 126 - 406
Target Start/End: Original strand, 4321694 - 4321974
Alignment:
| Q |
126 |
taatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgataaa |
225 |
Q |
| |
|
||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||| |||||| || |||| |||||||||| |||| |
|
|
| T |
4321694 |
taatacctgaatctctttccacacaagtttagcattgctgttttctaactcaatggaaactatatttctttgatagaagtttgaaggtatgcatcttaaa |
4321793 |
T |
|
| Q |
226 |
ggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttca |
325 |
Q |
| |
|
|||||||||||||| ||||| | | ||||||||||| ||| | |||||| |||| ||| ||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
4321794 |
ggaaatccattccagtgcagccattttaaatttcttgaaatatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttcttca |
4321893 |
T |
|
| Q |
326 |
tgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||||||||||| |||||||||| | | || |||||||| | ||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4321894 |
tgttctcaaatgttttagtactaaatcgttgtgcactatgacatggcatcttcaaagtcagtccctcaacagcttttgttc |
4321974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 122 - 406
Target Start/End: Complemental strand, 4352629 - 4352345
Alignment:
| Q |
122 |
aaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatga |
221 |
Q |
| |
|
||||||||||||| |||||||||| |||| |||||||||||||||||||||| | | |||||||||||||| |||||| || |||| || ||| |||| |
|
|
| T |
4352629 |
aaattaatacctgcatctctttccaaacaagtttgacattgctgttttctaacacaacggaaactaaatttctttgatagaagtttgaagctatacatgt |
4352530 |
T |
|
| Q |
222 |
taaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttc |
321 |
Q |
| |
|
|||||||||||||||||| ||||| ||| ||||||||||||||| | |||||| |||| ||| ||||||||| | ||| ||||||||||||||| |
|
|
| T |
4352529 |
taaaggaaatccattccagtgcagccatttcaaatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaagttgcagcaatctgagtttc |
4352430 |
T |
|
| Q |
322 |
ttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
|||||||||||||||||||| |||||| ||| || ||||||| | ||||| ||| |||| || ||| |||||| ||||||||| |
|
|
| T |
4352429 |
ttcatgttctcaaatgctttggtactaaaacgttgtgcactacgacctggcatcttaaaagtcagtccttcaacaacttttgttc |
4352345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 108 - 406
Target Start/End: Original strand, 4125082 - 4125380
Alignment:
| Q |
108 |
aaaaactaaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaacttt |
207 |
Q |
| |
|
|||||| ||| || ||| ||||||||| ||||||||||||||| |||||||||||| ||||||||||| |||||||| | ||||| |||||| || ||| |
|
|
| T |
4125082 |
aaaaacaaaactccaaagtaatacctgcatctctttccacacaagtttgacattgctattttctaactcaatggaaacaatatttctttgatagaagttt |
4125181 |
T |
|
| Q |
208 |
gtaggtatgcatgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaa |
307 |
Q |
| |
|
| ||||||||||| |||||||||||||||||| ||||| |||| | | |||||||||| | |||||| |||| ||| ||| ||||| | ||||| |
|
|
| T |
4125182 |
gaaggtatgcatgttaaaggaaatccattccagtgtagccatctcaattgttttgaaagatatttaaaatctccatcaagttgtgcaccagaaagttgaa |
4125281 |
T |
|
| Q |
308 |
gcaatctgagtttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| || ||| ||| || ||||||| || ||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
4125282 |
gcaatctgagtttcttcatcttcttaaatgcttcggtgctaaaacgttgtgcactacgtcctggcagcttcaaagtcagtccctcaacagcttttgttc |
4125380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 122 - 406
Target Start/End: Complemental strand, 4334892 - 4334608
Alignment:
| Q |
122 |
aaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatga |
221 |
Q |
| |
|
||||||||||||| ||| || ||| |||| |||||||||||||||||||||||| |||||||||| ||||| |||| ||||||| ||||||||||| |
|
|
| T |
4334892 |
aaattaatacctgcatctgttgccatacaagtttgacattgctgttttctaactcaatggaaactatatttctttgacggaactttgaaggtatgcatgt |
4334793 |
T |
|
| Q |
222 |
taaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttc |
321 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||||| |||||||| | |||||| |||| ||| ||| | ||| | ||||||||||||||||||| |
|
|
| T |
4334792 |
taaaggaaatccattccagtgcagccatctcaactttctggaaagatatttaaaatctccatcaagttgtgcgccagaaagttgaagcaatctgagtttc |
4334693 |
T |
|
| Q |
322 |
ttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||||| |||| ||||||||| |||||| ||| || ||||||| | ||||| |||||||| |||||||||||||| |||||||| |
|
|
| T |
4334692 |
ttcatcttcttaaatgctttggtactaaaacgttgtgcactacgacctggcagcttcaaagtcaatccctcaacagtttttgttc |
4334608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 119 - 406
Target Start/End: Complemental strand, 4359809 - 4359522
Alignment:
| Q |
119 |
tcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgca |
218 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | ||| |||||||||||||||| | |||||||||||||||| |||||| || |||| |||||||| |
|
|
| T |
4359809 |
tcaaaattaatacctgcatctctttccacacaagtctgatattgctgttttctaacacaatggaaactaaatttctttgatagaagtttgacggtatgca |
4359710 |
T |
|
| Q |
219 |
tgataaaggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagt |
318 |
Q |
| |
|
|| |||||||||||||||||| ||||| |||| ||||||||||||| | |||||| |||| ||| |||||||| | ||| |||||||||||| |
|
|
| T |
4359709 |
tgttaaaggaaatccattccactgcagccatctcaattttcttgaaagatgtttaaaatctccatcaagttgtacaccggaaagttgcagcaatctgagt |
4359610 |
T |
|
| Q |
319 |
ttcttcatgttctcaaatgctttagtactataacattttgcactatctcttggcaacttcaaagccaatccctcaacagcttttgttc |
406 |
Q |
| |
|
||||||||||||||||||| ||| || ||| ||| || ||||||| | ||||| ||||||| || |||||||||||||| |||| |
|
|
| T |
4359609 |
ttcttcatgttctcaaatgttttggtgctaaaacgttgtgcactacgacctggcagcttcaaactcagcccctcaacagctttagttc |
4359522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 154 - 360
Target Start/End: Original strand, 4134514 - 4134720
Alignment:
| Q |
154 |
ttgacattgctgttttctaactcgatggaaactaaatttccttgataaaactttgtaggtatgcatgataaaggaaatccattccaagaaagccaactca |
253 |
Q |
| |
|
|||| |||| ||||||||| || |||||||||||||||| ||| ||||| ||||| || || ||| |||||||||| |||||||| | ||||| |||| |
|
|
| T |
4134514 |
ttgatattgttgttttctagctgaatggaaactaaatttctttggtaaaagtttgtgggcatcaatgttaaaggaaattcattccaacacagccatctca |
4134613 |
T |
|
| Q |
254 |
gatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttcatgttctcaaatgctttagtactataaca |
353 |
Q |
| |
|
||||||||||||||| | |||||| |||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||| || |||||| |||| |
|
|
| T |
4134614 |
aatttcttgaaagatatttaaaatctccatcaagttgtacaccagaaggttgaagcaatctcagtttcttcatgttctcaaatgcattggtactaaaaca |
4134713 |
T |
|
| Q |
354 |
ttttgca |
360 |
Q |
| |
|
||||||| |
|
|
| T |
4134714 |
ttttgca |
4134720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 261 - 341
Target Start/End: Complemental strand, 6757576 - 6757496
Alignment:
| Q |
261 |
tgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttcatgttctcaaatgcttt |
341 |
Q |
| |
|
||||||||| | |||||| |||||||||||||| ||| | | ||| |||||||||||||| ||||| |||| ||||||||| |
|
|
| T |
6757576 |
tgaaagatatttaaaatctccattaagctgtaccccaacaagttgtagcaatctgagtttattcatcttcttaaatgcttt |
6757496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 226 - 345
Target Start/End: Original strand, 6533484 - 6533603
Alignment:
| Q |
226 |
ggaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttca |
325 |
Q |
| |
|
|||||||||| ||| | ||||| || |||| |||||||||| | | |||||| ||||| || || |||||| | | ||||||||||||||| || |||| |
|
|
| T |
6533484 |
ggaaatccatgccagtacagccatctaagatctcttgaaagacatttaaaatctccattcagttgcacaccagcaagttgaagcaatctgagcttattca |
6533583 |
T |
|
| Q |
326 |
tgttctcaaatgctttagta |
345 |
Q |
| |
|
| |||| |||||| |||||| |
|
|
| T |
6533584 |
tcttcttaaatgcgttagta |
6533603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 344
Target Start/End: Complemental strand, 6795544 - 6795427
Alignment:
| Q |
227 |
gaaatccattccaagaaagccaactcagatttcttgaaagatactcaaaatcaccattaagctgtacaccatcgaattgaagcaatctgagtttcttcat |
326 |
Q |
| |
|
||||||||| |||| | ||||| | |||| ||||||||| || | |||||| || ||||||| || ||| ||| |||||||||||||||| ||||| |
|
|
| T |
6795544 |
gaaatccatgccaatacagccacttaagatctcttgaaaggtatttaaaatctcccttaagcttcaccccagcgaggcgaagcaatctgagtttgttcat |
6795445 |
T |
|
| Q |
327 |
gttctcaaatgctttagt |
344 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
6795444 |
cttcttaaatgctttagt |
6795427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 115 - 200
Target Start/End: Original strand, 48015400 - 48015485
Alignment:
| Q |
115 |
aaaatcaaaattaatacctgggtctctttccacacaactttgacattgctgttttctaactcgatggaaactaaatttccttgata |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||| ||||| || |||| |||||| ||||||| |
|
|
| T |
48015400 |
aaaatcaaaattaatacctggttctctttccacacaacattgacattgatgttttccaactcactgaaaaccaaattttcttgata |
48015485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University