View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_32 (Length: 393)
Name: NF13864_low_32
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 375
Target Start/End: Original strand, 4749421 - 4749784
Alignment:
| Q |
11 |
cagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttg |
110 |
Q |
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| T |
4749421 |
cagagacgacgagggtgagaagttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttg |
4749520 |
T |
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| Q |
111 |
tggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactgnnn |
210 |
Q |
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| T |
4749521 |
tggaccgttatcaacctcactaatcatccacatgtcttcgaaagagccaaggttttaatactattaattaatgtggcattttcaaaatttgttactg-tt |
4749619 |
T |
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| Q |
211 |
nnnnnnnnnaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaa |
310 |
Q |
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| T |
4749620 |
tttttttttaacaaacaaaactatgaaccctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggacttacacatacggaaa |
4749719 |
T |
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| Q |
311 |
ttaggcaaatgaaatatctttcacaggtatgcgataggtgaattctttcttatcatattaatgat |
375 |
Q |
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| T |
4749720 |
ttaggcaaatgaaatatctttctcaggtatgcgataggtgaattctttcttatcatattaatgat |
4749784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 32 - 163
Target Start/End: Original strand, 4757923 - 4758054
Alignment:
| Q |
32 |
gttggaagatgaagacattatagacttgcttcttttgttcttgttagctggtcatgaaagctctgcttatggtgttttgtggaccgttatcaacctcact |
131 |
Q |
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| T |
4757923 |
gttggaggatgaagacattatagacttgcttcttgtgttcttgttagctggtcatgaaagctctgctcatggaattttgtggactattatttacctcatt |
4758022 |
T |
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| Q |
132 |
aatcatccacatgtcttcgaaagagccaaggt |
163 |
Q |
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| T |
4758023 |
gatcatccacatgtcttccaaagggccaaggt |
4758054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 240 - 369
Target Start/End: Original strand, 4758195 - 4758324
Alignment:
| Q |
240 |
ctttcagaaagaacaagaagagattatggcaagaaggccttccgatcaaaaaggaattacacatacggaaattaggcaaatgaaatatctttcacaggta |
339 |
Q |
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| T |
4758195 |
ctttcagaaagaacaagaagagatcatggaaacaaggccttccactcaaaaaggactgaaccttaaggaaattaagcaaatgcaatatctttcaaaggta |
4758294 |
T |
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| Q |
340 |
tgcgataggtgaattctttcttatcatatt |
369 |
Q |
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| T |
4758295 |
tgtgaaatgtgaattctttcttgtcatatt |
4758324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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