View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_33 (Length: 393)

Name: NF13864_low_33
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_33
NF13864_low_33
[»] chr5 (10 HSPs)
chr5 (1-279)||(17116318-17116595)
chr5 (330-393)||(17116676-17116739)
chr5 (122-243)||(24153923-24154044)
chr5 (125-243)||(31079703-31079821)
chr5 (131-204)||(17115754-17115827)
chr5 (120-204)||(35145619-35145703)
chr5 (132-204)||(24153246-24153318)
chr5 (125-243)||(9164739-9164856)
chr5 (144-202)||(29108704-29108762)
chr5 (144-236)||(29264643-29264735)
[»] chr4 (5 HSPs)
chr4 (1-258)||(50071244-50071497)
chr4 (114-261)||(2486895-2487043)
chr4 (129-243)||(12007469-12007583)
chr4 (131-216)||(50071987-50072072)
chr4 (120-199)||(39484388-39484467)
[»] chr3 (4 HSPs)
chr3 (142-261)||(45145851-45145969)
chr3 (137-231)||(45146658-45146752)
chr3 (125-243)||(51489805-51489923)
chr3 (120-260)||(45004703-45004843)
[»] chr2 (6 HSPs)
chr2 (131-241)||(35064378-35064488)
chr2 (111-216)||(27060350-27060449)
chr2 (120-231)||(35063634-35063745)
chr2 (125-233)||(1299991-1300097)
chr2 (175-262)||(1300847-1300934)
chr2 (149-243)||(38356852-38356946)
[»] chr8 (9 HSPs)
chr8 (152-240)||(2623231-2623319)
chr8 (125-204)||(279719-279798)
chr8 (125-204)||(636054-636133)
chr8 (125-204)||(821857-821936)
chr8 (144-231)||(13231823-13231910)
chr8 (153-243)||(7043111-7043201)
chr8 (120-212)||(278975-279067)
chr8 (120-212)||(636785-636877)
chr8 (120-212)||(822588-822680)
[»] chr1 (4 HSPs)
chr1 (120-243)||(25476034-25476157)
chr1 (142-260)||(44634034-44634152)
chr1 (143-237)||(27702579-27702673)
chr1 (125-202)||(44633348-44633425)
[»] chr6 (3 HSPs)
chr6 (175-262)||(26671502-26671589)
chr6 (142-243)||(30921572-30921673)
chr6 (175-262)||(26674030-26674117)
[»] chr7 (1 HSPs)
chr7 (125-204)||(4833157-4833236)
[»] scaffold0301 (1 HSPs)
scaffold0301 (129-201)||(7855-7927)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 17116318 - 17116595
Alignment:
Q  1 aagcagtaaaaagaagtgatcgaggtttgtaatcccaccaccgtcagatggtggtagnnnnnnnngtttgaagatgattgagaggtcaaactggcttctg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||| || |||||||        |||||||||||| ||||||||||||||| ||| ||    
T  17116318 aagcagtaaaaagaagcgatcgaggtttgtaatcccaccaccatcaaatagtggtagttttttt-gtttgaagatgactgagaggtcaaactgacttgtg 17116416  T
Q  101 aaagagaaataattaattcaaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaac 200  Q
    |||||||||||||||||| |||||||||  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17116417 aaagagaaataattaattgaaaactaacactgttaataagtaaaggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaac 17116516  T
Q  201 tagatgggatgttagtaacattttaataaactttaggggaggtcaatacaattttcccttaatttatccctcttattat 279  Q
    |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  17116517 tagaagggatgttagtaacattttaataaactttagtggaggtcaatgcaattttaccttaatttatccctcttattat 17116595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 330 - 393
Target Start/End: Original strand, 17116676 - 17116739
Alignment:
Q  330 atggatttgaaagagtaacagatttagaaagtgggaccactgaccgaaaacgtgaaaacaaggc 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  17116676 atggatttgaaagagtaacagatttagaaagtgggaccactgaccaaaaacgtgaaaacaaggc 17116739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 243
Target Start/End: Original strand, 24153923 - 24154044
Alignment:
Q  122 aactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacat 221  Q
    |||||| ||||||||||   ||||||||||||||| ||||||||  || ||||| |||||||| ||||||||||||||||||| ||| | | | |  |||    
T  24153923 aactaatggtgttaatataaaagggaggtgtttgtttatttgatagaaacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcat 24154022  T
Q  222 tttaataaactttaggggaggt 243  Q
    |||||||||| |||||||||||    
T  24154023 tttaataaaccttaggggaggt 24154044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 31079703 - 31079821
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacatttt 224  Q
    ||||||||||||| |  |||||| |||||||| |||||| ||||| | ||| |||||||| ||||  |||||||||||||   | |||||||  ||||||    
T  31079703 taacggtgttaatcaagaagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccatttt 31079802  T
Q  225 aataaactttaggggaggt 243  Q
    ||||||| |||||||||||    
T  31079803 aataaaccttaggggaggt 31079821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 17115827 - 17115754
Alignment:
Q  131 tgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||||||| | ||||||| ||||||| |||||||||| | ||||| ||||||| |||| |||||||||||||||    
T  17115827 tgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggttggtgtaagttttaaaactaga 17115754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 35145703 - 35145619
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||| |||| ||||||| |||||||||| |||||||| ||||| |||| | ||  | |||||||||||| |||||||||||||||    
T  35145703 aaaagtaactgtgttaacaagtaagggatgtgtttgtctattttatgagaactcgagggaggttagtgtaagttttaaaactaga 35145619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 24153318 - 24153246
Alignment:
Q  132 gttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    ||||| ||| |||||||||||||||  |||| || | | ||||| |||||||||||||| |||||||||||||    
T  24153318 gttaacaagaaagggaggtgtttgtccatttcattagaacttaagggaggttagtgttacttttaaaactaga 24153246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 9164739 - 9164856
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacatttt 224  Q
    ||||||||||||  |  ||||||||||||||| | |||| |||||  |||| |||||||| |||   ||||||||||||| ||| ||| |||  ||||||    
T  9164739 taacggtgttaaccaagaagggaggtgtttgtctctttgttgaaaatttaagggaggttaatgtccattttaaaactaga-gggctgtgagtgccatttt 9164837  T
Q  225 aataaactttaggggaggt 243  Q
    ||||||  |||||||||||    
T  9164838 aataaatcttaggggaggt 9164856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 29108704 - 29108762
Alignment:
Q  144 gggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaacta 202  Q
    ||||||||||||| |||||| | ||| || || |||||||||||| |||||||||||||    
T  29108704 gggaggtgtttgtatatttgttaaaaactcaagggaggttagtgtaagttttaaaacta 29108762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 29264735 - 29264643
Alignment:
Q  144 gggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttag 236  Q
    ||||||||||||| ||||||   ||| || || |||||||| | | ||||||||||||| |  ||||||||||| |||||| |||||| ||||    
T  29264735 gggaggtgtttgtatatttgtgaaaaactcaagggaggttactataagttttaaaactaaagtggatgttagtatcattttcataaaccttag 29264643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 163; Significance: 6e-87; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 50071497 - 50071244
Alignment:
Q  1 aagcagtaaaaagaagtgatcgaggtttgtaatcccaccaccgtcagatggtggtagnnnnnnnngtttgaagatgattgagaggtcaaactggcttctg 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||| ||          | |||||||||| ||||||||||||||||||| ||    
T  50071497 aagcagtaaaaagaagcgatcgaggtttgtaatcccaccaccgtcagacggtagt----ttttttgattgaagatgactgagaggtcaaactggcttgtg 50071402  T
Q  101 aaagagaaataattaattcaaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaac 200  Q
    |||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  50071401 aaagagaaataattaactgaaaactaacggtgttaataagtaagggaagtgtttgtgtatttgatgaaagcttaagggaggttagtgttaattttaaaac 50071302  T
Q  201 tagatgggatgttagtaacattttaataaactttaggggaggtcaatacaattttccc 258  Q
    |||| |||||||||||||||||||||| |||||||||||||| |||| ||||||||||    
T  50071301 tagaagggatgttagtaacattttaatcaactttaggggaggccaatgcaattttccc 50071244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 114 - 261
Target Start/End: Original strand, 2486895 - 2487043
Alignment:
Q  114 taattcaaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaa-ggaggttagtgttagttttaaaactagatgggatgt 212  Q
    ||||| |||||||||| ||||| |||||||||||||||||||| | |||||||| |||||||| |||  ||||||||||||||||||||||| ||| |||    
T  2486895 taattgaaaactaacgatgttagtaagtaagggaggtgtttgtatttttgatgagagcttaaagggacattagtgttagttttaaaactagaaggggtgt 2486994  T
Q  213 tagtaacattttaataaactttaggggaggtcaatacaattttccctta 261  Q
     |||  | |||||||| || |||| |||||||| |  ||||||||||||    
T  2486995 cagtgtcgttttaatagaccttagtggaggtcattgtaattttccctta 2487043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 243
Target Start/End: Complemental strand, 12007583 - 12007469
Alignment:
Q  129 ggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaata 228  Q
    ||||||||| |  |||||||||||||||||||||||||| | |||||  ||||||| |||  |||||||||||||| ||| ||| |||  ||||||| ||    
T  12007583 ggtgttaatgaaaaagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgtcagtgtcattttagta 12007484  T
Q  229 aactttaggggaggt 243  Q
    |||  ||||||||||    
T  12007483 aaccataggggaggt 12007469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 216
Target Start/End: Original strand, 50071987 - 50072072
Alignment:
Q  131 tgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagt 216  Q
    |||||||| | ||||||| ||||||| |||||||||| | ||||| ||||||| |||| ||||||||||||| | ||| |||||||    
T  50071987 tgttaatatggaagggagatgtttgtatatttgatgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagt 50072072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 39484467 - 39484388
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaa 199  Q
    |||| ||||||||||||||| ||||||| |||||| | ||||| |||| | ||| | |||||| ||||| ||||||||||    
T  39484467 aaaagtaacggtgttaataaataagggatgtgtttatatatttcatgagaacttgagggaggtaagtgtaagttttaaaa 39484388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 261
Target Start/End: Complemental strand, 45145969 - 45145851
Alignment:
Q  142 aagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggag 241  Q
    ||||||||||||||| ||||||||  || ||||| ||| |||||||||||||||||||||||| ||| | | | || |||||||||||||||||||||||    
T  45145969 aagggaggtgtttgtttatttgatagaaacttaagggatgttagtgttagttttaaaactaga-ggggtctaactatcattttaataaactttaggggag 45145871  T
Q  242 gtcaatacaattttccctta 261  Q
    || |||  ||||||||||||    
T  45145870 gtgaatgtaattttccctta 45145851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 231
Target Start/End: Original strand, 45146658 - 45146752
Alignment:
Q  137 taagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaac 231  Q
    |||| ||||||||||||||| ||||| || | | | ||| ||||||||||||||||||||||| |||| |||||||| ||  |||||||||||||    
T  45146658 taagaaagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaac 45146752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 125 - 243
Target Start/End: Original strand, 51489805 - 51489923
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacatttt 224  Q
    ||||||||||||  |  ||||||||||||||| |||||| | ||| | ||| |||||||| | ||  ||||||||||||| ||| |||||||  ||||||    
T  51489805 taacggtgttaaccaagaagggaggtgtttgtctatttgttaaaaacataagggaggttaatattcattttaaaactagagggggtgttagtgccatttt 51489904  T
Q  225 aataaactttaggggaggt 243  Q
    ||||||| |||||||||||    
T  51489905 aataaaccttaggggaggt 51489923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 260
Target Start/End: Complemental strand, 45004843 - 45004703
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaac 219  Q
    |||| |||| |||||||||  |||||||| ||||||| ||||| || ||| ||||| |||||||  ||| || |||||||||| | ||| ||| | | ||    
T  45004843 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgac 45004744  T
Q  220 attttaataaactttaggggaggtcaatacaattttccctt 260  Q
    |||||||||||| | || |||||| | |  |||||||||||    
T  45004743 attttaataaacctcagaggaggtgagtgtaattttccctt 45004703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 131 - 241
Target Start/End: Original strand, 35064378 - 35064488
Alignment:
Q  131 tgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaa 230  Q
    |||||| || |||||||||| ||| | |||||||||| |  |||| ||| |||||||| ||||||||||||||| |||||||||||  ||||||||||||    
T  35064378 tgttaacaaataagggaggtatttatctatttgatgagaatttaagggaagttagtgtgagttttaaaactagaggggatgttagtgtcattttaataaa 35064477  T
Q  231 ctttaggggag 241  Q
    ||||| |||||    
T  35064478 ctttaagggag 35064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 216
Target Start/End: Complemental strand, 27060449 - 27060350
Alignment:
Q  111 aattaattcaaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggat 210  Q
    |||||||| |||||||||||||||| |||| ||| |||||||      ||||||||| ||||||| ||| |||||| ||||||||||||||||| | |||    
T  27060449 aattaattgaaaactaacggtgttattaagaaagagaggtgt------atttgatgagagcttaagggatgttagtattagttttaaaactagaggagat 27060356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 231
Target Start/End: Complemental strand, 35063745 - 35063634
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaac 219  Q
    |||| |||| |||||||||  |||||||| ||||||| ||||| || ||| ||||| |||||||  ||| ||||||||||||||| ||  ||| ||| ||    
T  35063745 aaaattaacagtgttaatagataagggagatgtttgtctatttcataaaaacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgac 35063646  T
Q  220 attttaataaac 231  Q
    ||||||||||||    
T  35063645 attttaataaac 35063634  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 125 - 233
Target Start/End: Complemental strand, 1300097 - 1299991
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacatttt 224  Q
    |||||||||||||||| ||||||||||||||| ||||| || | | | | |  |||||||| ||||||||| |||||||| ||| |||  ||  ||||||    
T  1300097 taacggtgttaataaggaagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggggtgt--gtgtcatttt 1300000  T
Q  225 aataaactt 233  Q
    |||||||||    
T  1299999 aataaactt 1299991  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 1300847 - 1300934
Alignment:
Q  175 aaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggaggtcaatacaattttcccttaa 262  Q
    |||| |||||||||| |||||||||||||| ||| | | | |  ||||||||||||| |||||| |||| |||  |||||||||||||    
T  1300847 aagggggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaattttcccttaa 1300934  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 243
Target Start/End: Complemental strand, 38356946 - 38356852
Alignment:
Q  149 gtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggaggt 243  Q
    |||||||| |||||||| ||| ||||| |||||||| |||  |||||||||||||| ||| |||| ||  ||| |||||| || | |||||||||    
T  38356946 gtgtttgtatatttgattaaaacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggt 38356852  T

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Target: chr8 (Bit Score: 49; Significance: 6e-19; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 2623231 - 2623319
Alignment:
Q  152 tttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttagggga 240  Q
    ||||| |||||||||||| || || |||||||||||| |||||||||| |||||||||||| |||  ||||||||||||| ||||||||    
T  2623231 tttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaaccttagggga 2623319  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 279719 - 279798
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||||||||||| ||  ||||||||||||| | || ||||||||| ||||||||||||||| || |||||||||| ||||    
T  279719 taacggtgttaacaacaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattaga 279798  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 636133 - 636054
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||||||||||| ||  ||||||||||||| | || ||||||||| ||||||||||||||| || |||||||||| ||||    
T  636133 taacggtgttaacaacaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattaga 636054  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 204
Target Start/End: Complemental strand, 821936 - 821857
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||||||||||| ||  ||||||||||||| | || ||||||||| ||||||||||||||| || |||||||||| ||||    
T  821936 taacggtgttaacaacaaagggaggtgtttttctaattgatgaaaacttaaaggaggttagcgtaagttttaaaattaga 821857  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 144 - 231
Target Start/End: Original strand, 13231823 - 13231910
Alignment:
Q  144 gggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaac 231  Q
    |||||||||||||| ||||||||| | || || |||||||||||| |||||||||| |||| ||| ||| |||  ||||||| |||||    
T  13231823 gggaggtgtttgtgcatttgatgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaac 13231910  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 243
Target Start/End: Complemental strand, 7043201 - 7043111
Alignment:
Q  153 ttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggaggt 243  Q
    |||| |||||| ||||| ||||| |||||||| | ||  ||||||||||||| | | |||||||  ||||||||||||| |||||||||||    
T  7043201 ttgtctatttgttgaaaacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggt 7043111  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Complemental strand, 279067 - 278975
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgt 212  Q
    |||| |||| |||||||||   |||||||||||||||  ||||||| ||| ||||| |||| ||| ||| ||||||||||||| | |||||||    
T  279067 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgt 278975  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 636785 - 636877
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgt 212  Q
    |||| |||| |||||||||   |||||||||||||||  ||||||| ||| ||||| |||| ||| ||| ||||||||||||| | |||||||    
T  636785 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgt 636877  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 822588 - 822680
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgt 212  Q
    |||| |||| |||||||||   |||||||||||||||  ||||||| ||| ||||| |||| ||| ||| ||||||||||||| | |||||||    
T  822588 aaaattaacagtgttaatagtgaagggaggtgtttgtcaatttgataaaaacttaagggagattaatgtaagttttaaaactaaaggggatgt 822680  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 25476034 - 25476157
Alignment:
Q  120 aaaactaacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaac 219  Q
    |||| ||||||||||||||  |||||||||||||||| ||||| || ||| ||| | ||||||| |||| ||||||||||||||| ||  ||| |||  |    
T  25476034 aaaattaacggtgttaatagataagggaggtgtttgtttatttcataaaaacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtc 25476133  T
Q  220 attttaataaactttaggggaggt 243  Q
    |||||||||||| | |||||||||    
T  25476134 attttaataaacctcaggggaggt 25476157  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 260
Target Start/End: Original strand, 44634034 - 44634152
Alignment:
Q  142 aagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggag 241  Q
    |||||||||| |||| |||||||||| | ||||| ||||||| || || |||||||||||||| ||| ||| | |  ||||||| |||||||||||||||    
T  44634034 aagggaggtgattgtatatttgatgagaacttaagggaggttggtatttgttttaaaactagagggggtgtcaatgtcattttagtaaactttaggggag 44634133  T
Q  242 gtcaatacaattttccctt 260  Q
    || | | |||||| |||||    
T  44634134 gtgagtgcaatttgccctt 44634152  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 237
Target Start/End: Complemental strand, 27702673 - 27702579
Alignment:
Q  143 agggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttagg 237  Q
    |||||||||||||| |||||||| ||| || || ||| |||||||| | |||||||| || |  |||||| |||  ||||||||||||| |||||    
T  27702673 agggaggtgtttgtctatttgataaaaactcaagggaagttagtgtaaattttaaaattatagtggatgtcagtgtcattttaataaaccttagg 27702579  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 202
Target Start/End: Complemental strand, 44633425 - 44633348
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaacta 202  Q
    ||||||||||||||   ||||||||| ||||| |||||||  |   ||||| |||||||||||| |||||||||||||    
T  44633425 taacggtgttaatagaaaagggaggtatttgtctatttgaaaattacttaagggaggttagtgtaagttttaaaacta 44633348  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 26671502 - 26671589
Alignment:
Q  175 aaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggaggtcaatacaattttcccttaa 262  Q
    |||| |||||||||| |||||||||||||| ||| | | | |  ||||||||||||||||||||||||| |||  |||||||||||||    
T  26671502 aagggggttagtgttggttttaaaactagagggggtctaactgtcattttaataaactttaggggaggtaaatgtaattttcccttaa 26671589  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 30921572 - 30921673
Alignment:
Q  142 aagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggag 241  Q
    |||||||||||| || ||| |||| | | ||||| |||| ||| |||  |||||||||||||| ||||| |||||  |||||||||| | ||||||||||    
T  30921572 aagggaggtgttagtctatatgattagaacttaagggagtttattgtatgttttaaaactagaggggattttagtgtcattttaatagattttaggggag 30921671  T
Q  242 gt 243  Q
    ||    
T  30921672 gt 30921673  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 175 - 262
Target Start/End: Original strand, 26674030 - 26674117
Alignment:
Q  175 aaggaggttagtgttagttttaaaactagatgggatgttagtaacattttaataaactttaggggaggtcaatacaattttcccttaa 262  Q
    |||| |||||||||| |||||||||||||| ||| | | | |  ||||||||||||| |||||| |||| |||  |||||||||||||    
T  26674030 aagggggttagtgttggttttaaaactagagggggtctaactgtcattttaataaaccttagggaaggtaaatgtaattttcccttaa 26674117  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 125 - 204
Target Start/End: Original strand, 4833157 - 4833236
Alignment:
Q  125 taacggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaactaga 204  Q
    |||||||||||||| | |||| ||  |||||| |||||||| ||| ||||| | |||||||||| |||||||||||||||    
T  4833157 taacggtgttaatatggaaggaagtcgtttgtatatttgattaaaacttaaggaaggttagtgtaagttttaaaactaga 4833236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 7927 - 7855
Alignment:
Q  129 ggtgttaataagtaagggaggtgtttgtgtatttgatgaaagcttaaaggaggttagtgttagttttaaaact 201  Q
    ||||||||||   |||| ||||||||||||||||||||| | |||||  ||| |||||||  |||||||||||    
T  7927 ggtgttaatagaaaaggaaggtgtttgtgtatttgatgagaacttaagagagattagtgtaggttttaaaact 7855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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