View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_35 (Length: 385)
Name: NF13864_low_35
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 12374403 - 12374043
Alignment:
| Q |
10 |
aagaatatgctcaacacatgaaaaaactagcactcaagataatggaactaatcgccctaagcttaggattaccccccaaaagatttgatgatttcttcaa |
109 |
Q |
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| T |
12374403 |
aagaatatgctcaacacatgaaaaaactagcactcaagataatggaactcatcgccctaagcttaggattacccccaaaaagatttgatgatttcttcaa |
12374304 |
T |
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| Q |
110 |
agatgaaacaagttggatcagactcaaccattatccaccttgtccaaaccctgacattgttctaggatgtggtcgccacaaagattctggtgctttaact |
209 |
Q |
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| T |
12374303 |
agatgaaacaagctggatcagactcaatcattatccaccttgtccaaaccctgacattgttctaggttgtggtcgccacaaagattctggtgctttaact |
12374204 |
T |
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| Q |
210 |
gttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtgaatgggttttggttaagcctttacctaatgcttatattatcaatg |
309 |
Q |
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| T |
12374203 |
gttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtgaatgggttttggttaagcctttacctaatgcttatattatcaatg |
12374104 |
T |
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| Q |
310 |
ttggagatgtaattcaggtactatatgcttcttaggacttgtgactttcatgctcaataat |
370 |
Q |
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| T |
12374103 |
ttggagatgtaattcaggtactatatgcttcttaggacttgtgactttgatgcccaataat |
12374043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 10 - 347
Target Start/End: Complemental strand, 12323456 - 12323119
Alignment:
| Q |
10 |
aagaatatgctcaacacatgaaaaaactagcactcaagataatggaactaatcgccctaagcttaggattaccccccaaaagatttgatgatttcttcaa |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12323456 |
aagaatatgctcaacacatgaaaaaactagcactcaagataatggaactcatcgccctaagcttaggattacccccaaaaagatttgatgatttcttcaa |
12323357 |
T |
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| Q |
110 |
agatgaaacaagttggatcagactcaaccattatccaccttgtccaaaccctgacattgttctaggatgtggtcgccacaaagattctggtgctttaact |
209 |
Q |
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| T |
12323356 |
agatgaaacaagttggatcagactcaaccattatccaccttgtccaaaccctgacattgttctaggttgtggtcgccacaaagattctggtgctttaact |
12323257 |
T |
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| Q |
210 |
gttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtgaatgggttttggttaagcctttacctaatgcttatattatcaatg |
309 |
Q |
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| T |
12323256 |
gttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtgaatgggttttggttaagcctttacctaatgcttatattatcaatg |
12323157 |
T |
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| Q |
310 |
ttggagatgtaattcaggtactatatgcttcttaggac |
347 |
Q |
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| T |
12323156 |
ctggagatgtaattcaggtactatatacttcttaggac |
12323119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 12387309 - 12387223
Alignment:
| Q |
179 |
tggtcgccacaaagattctggtgctttaactgttcttgctcaagatgaagttagtggattagaagtgaggagaaaatctgatggtga |
265 |
Q |
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|||||| ||||| |||||| ||||||| ||||| ||||| |||||||| || |||| ||| |||| ||||||||||| | |||||| |
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| T |
12387309 |
tggtcgtcacaaggattctagtgctttgactgtgcttgcacaagatgatattggtggcttacaagttaggagaaaatcagttggtga |
12387223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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