View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_36 (Length: 384)
Name: NF13864_low_36
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 24059382 - 24059027
Alignment:
| Q |
10 |
tcgaagaatatgtcctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactttggtttcatacaacatcttctttgtcatct |
109 |
Q |
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||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |
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| T |
24059382 |
tcgaaaaaaatgtcctttcctgcaacacatacatttatgatacatttaaaatatcaactttaacagactatggtttcatacaacatcttctgtgtcatct |
24059283 |
T |
|
| Q |
110 |
acaaatccatttcctacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagtt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24059282 |
acaaatccatttcctacacttgcataagtagaagaatccccatttttattgttattcaaaacatctgatgccaactcaagatggagagcctcttctagtt |
24059183 |
T |
|
| Q |
210 |
gacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagccaactctaaaaccttgtttacagactccatattcacttt |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
24059182 |
gacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcacttccaagccagctctaaaaccttgtttacagactccatattcacttt |
24059083 |
T |
|
| Q |
310 |
gccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagctta |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
24059082 |
gccagtcaaataagggtccatcatttcatgaaaagtgccctttttatggcagctta |
24059027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 365
Target Start/End: Original strand, 14670796 - 14670998
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
14670796 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14670895 |
T |
|
| Q |
263 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
362 |
Q |
| |
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||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
14670896 |
ttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14670995 |
T |
|
| Q |
363 |
tta |
365 |
Q |
| |
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||| |
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|
| T |
14670996 |
tta |
14670998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 365
Target Start/End: Complemental strand, 14685517 - 14685315
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | ||||||||||||||||| |
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| T |
14685517 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataacacataccccattgatggtctgttctccggacgctcctccaagcac |
14685418 |
T |
|
| Q |
263 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
362 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||| | |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
14685417 |
ttccaagccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaaaatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14685318 |
T |
|
| Q |
363 |
tta |
365 |
Q |
| |
|
||| |
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|
| T |
14685317 |
tta |
14685315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 163 - 365
Target Start/End: Complemental strand, 14705207 - 14705005
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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|
| T |
14705207 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
14705108 |
T |
|
| Q |
263 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
362 |
Q |
| |
|
||||| |||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
14705107 |
ttccatgccaactctaaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
14705008 |
T |
|
| Q |
363 |
tta |
365 |
Q |
| |
|
||| |
|
|
| T |
14705007 |
tta |
14705005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 163 - 365
Target Start/End: Complemental strand, 30731024 - 30730822
Alignment:
| Q |
163 |
attcaaaacatctgatgccaactcaagatggagagcctcttctagttgacataatatgtaccccattgatggtctgttcactcgacgctcctccaagcac |
262 |
Q |
| |
|
|||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| | |||||||||| | |||||||||||||||||| |
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| T |
30731024 |
attcgaaacatgtgatgccaactcaagatggagagcctcttctagttgacataatacataccccatcggtggtctgttctcccgacgctcctccaagcac |
30730925 |
T |
|
| Q |
263 |
ttccaagccaactctaaaaccttgtttacagactccatattcactttgccagtcaaataagggtccatcatttcatgaaaagtaccctttttattgcagc |
362 |
Q |
| |
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||||| ||||||| |||||||||||||| ||| |||||||||||||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||| | |
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| T |
30730924 |
ttccatgccaactataaaaccttgtttagagaatccatattcactttgccaatcaaatatgggtccatcatttcatgaaaggtaccctttttatcgcaac |
30730825 |
T |
|
| Q |
363 |
tta |
365 |
Q |
| |
|
||| |
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|
| T |
30730824 |
tta |
30730822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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