View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_39 (Length: 350)
Name: NF13864_low_39
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 342
Target Start/End: Complemental strand, 28940279 - 28939951
Alignment:
| Q |
15 |
aatttgtttctcatatatgacacactcactgaattccaaaacacattagactcatatttaagctacatagtgccaacaaaacacacaccatcatattctc |
114 |
Q |
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| T |
28940279 |
aatttgtttctcatatatgacacactcactgaattccaaaacacattagactcatatttaagctacatagtgccaacaaaacacacaccatcatattctc |
28940180 |
T |
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| Q |
115 |
tgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagttagtttaccccatacccttttgg-ttttacctcaaaagtttgttcttat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
28940179 |
tgaaacttgcatgagaaaccatcttttcaagatacttacatctctctcagttagtttaccccatacccttttggtttttacctcaaaagtttgttcttat |
28940080 |
T |
|
| Q |
214 |
ccaaatagtctttgcttctgaaggctctataaatatacacacaaattcagaagctaaggtaactcattagagaggtttgagaaaagatggtgagatcttg |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28940079 |
ccaaatagtgtttgcttctgaaggctctataaatatacacacaaattcagaagctaaggtaactcattagagaggtttgagaaaagatggtgagatcttg |
28939980 |
T |
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| Q |
314 |
ctggaagccagctgtagatggtgatgatg |
342 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
28939979 |
ctggaagccagctgtagatggtgatgatg |
28939951 |
T |
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