View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_40 (Length: 347)
Name: NF13864_low_40
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 7091157 - 7091499
Alignment:
| Q |
1 |
tgcatcactcactccttgcacttttattacttgccttaagctataatccaacacaatatcttgcgcaaaaatagtatttaagtgtggtccactttaatgg |
100 |
Q |
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| T |
7091157 |
tgcatcactcactccttgcacttttattacttgccttaagctataatccaacacaatatcttgcgcaaaaatagtatttaagtgtggtccactttaatgg |
7091256 |
T |
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| Q |
101 |
ggtcaatggtcatcagacccatatagaaagatcttcatgatcttgtgttattggttttaaatttttgatataaaatgcatttcctatcccttggatttta |
200 |
Q |
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| T |
7091257 |
ggtcaatggtcatcagacccatatagaaagatcttcatgatcttgtgttattggttttaaatttttgatataaaatgcatttcctatccattggatttta |
7091356 |
T |
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| Q |
201 |
-tccacggttttaatcctccaacttttaaattgatcaactttttccccatatatgttttttgagcttgacnnnnnnnngtgttaattttgaggttgaatt |
299 |
Q |
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| T |
7091357 |
gtccacggttttaatcctccaacttttaaattgattaactttttccccatatatgttttttgagcttgacttttttttgtgttaattttgaggttgaatt |
7091456 |
T |
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| Q |
300 |
ttgatgatgtgagatgtttacgtgacaactcagttgatgatgt |
342 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||| |
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| T |
7091457 |
ttgatgatgtgagatgtttacatgacaattcagttgatgatgt |
7091499 |
T |
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