View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_43 (Length: 324)
Name: NF13864_low_43
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 317
Target Start/End: Original strand, 4387086 - 4387408
Alignment:
| Q |
15 |
attttgaccatagaaatacttaggaccactacttttggcatctaatgctccacacactctttccctcttcactttgttctgtccataagtgcgatatata |
114 |
Q |
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| T |
4387086 |
attttgaccatagaaatacttaggaccactacttttggcatctaatgctc-acacactctttccctcttcactttgttctgtccataagtgcgatatata |
4387184 |
T |
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| Q |
115 |
gtacttctatttacttgtccctcaatttttcagtcttttggcctgtagtgctcctttaccatatcctatcctataatgcatgttcctgtttcta------ |
208 |
Q |
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| T |
4387185 |
gtacttctatttacttgcccctcaatttttcagtcttttggcctgtggtgctcctttaccatatcctatcctataatgcatgttcctgtttctataataa |
4387284 |
T |
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| Q |
209 |
---------------taataaaattttaggatgaaacggatgctatccaatctaaagaaaaacctttgaacttaaaaaacacttacaaatgtattttatc |
293 |
Q |
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| T |
4387285 |
tttatcttttttctttaataaaattttaggatgaaacggatgctattcaatctaaagaaaaatctttgaatttaaagaacgcttacaaatgtattttatc |
4387384 |
T |
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| Q |
294 |
ttcgtctaaatgatagtttctctg |
317 |
Q |
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|||||||||||||||||||||||| |
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| T |
4387385 |
ttcgtctaaatgatagtttctctg |
4387408 |
T |
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