View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_45 (Length: 318)

Name: NF13864_low_45
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_45
NF13864_low_45
[»] chr7 (1 HSPs)
chr7 (17-303)||(3087119-3087405)
[»] chr6 (12 HSPs)
chr6 (99-300)||(4299050-4299251)
chr6 (103-299)||(4622843-4623039)
chr6 (99-300)||(4626653-4626854)
chr6 (103-171)||(4557956-4558024)
chr6 (250-300)||(4259534-4259584)
chr6 (103-289)||(4586349-4586535)
chr6 (109-155)||(4612957-4613003)
chr6 (234-290)||(4255985-4256041)
chr6 (263-300)||(4602494-4602531)
chr6 (229-288)||(3172455-3172514)
chr6 (103-160)||(4571814-4571871)
chr6 (109-161)||(4599011-4599063)
[»] chr8 (2 HSPs)
chr8 (103-171)||(16685519-16685587)
chr8 (197-289)||(20863170-20863262)
[»] chr5 (1 HSPs)
chr5 (241-300)||(24107077-24107136)
[»] scaffold0288 (1 HSPs)
scaffold0288 (229-293)||(3077-3141)
[»] scaffold0477 (2 HSPs)
scaffold0477 (111-152)||(3930-3971)
scaffold0477 (220-300)||(4039-4119)


Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 17 - 303
Target Start/End: Complemental strand, 3087405 - 3087119
Alignment:
Q  17 aaaaagtgtgttagaaagcgttagagagtgtattcctagtaagctattgacttcttctataattatgacaagcagatgagatttta-gacaccaaagtag 115  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||  ||| ||| |||||    
T  3087405 aaaaagtgtgttagaaagcgtt-gagagtgtattcctagcaagctattgacttcttctataattatgacaagcatatgagagtttctgacgccagagtag 3087307  T
Q  116 actgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaatttgtcattgaagt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087306 actgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaatttgtcattgaagt 3087207  T
Q  216 gggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtg 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3087206 gggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattctgtg 3087119  T

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Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 99 - 300
Target Start/End: Original strand, 4299050 - 4299251
Alignment:
Q  99 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 198  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||| |||||  ||||| | ||||||  |  | ||| ||| |||  |||  ||    
T  4299050 tttagacatcaaactagactgtattccaggattgcagaactttcgattgaaagatctaactgactttataaggagtacaaatccaaatgatgtcatggta 4299149  T
Q  199 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 298  Q
    ||||||| |||||||| ||  ||||| || |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||| || ||||    
T  4299150 gaatttgccattgaagcggcagatagatttcacaaagcatctgctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctatt 4299249  T
Q  299 ct 300  Q
    ||    
T  4299250 ct 4299251  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 103 - 299
Target Start/End: Complemental strand, 4623039 - 4622843
Alignment:
Q  103 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 202  Q
    |||||| ||||||||||| |||| |||||| ||||||||||  | |||||| |||||||| | |||||| ||  ||| | ||| |||  |||  ||||||    
T  4623039 gacaccgaagtagactgtgttcctggattgaagaactttcggttaaaggatttgcctgactttataaggattacagagccaaatgatgtcatggtagaat 4622940  T
Q  203 ttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattc 299  Q
    || ||||||||| ||  ||  | || |||||| ||||||||||||| ||||| |||||| |||||||||||| |||||  ||||||||||| |||||    
T  4622939 ttctcattgaagcggcagaacgatttcacaaatcctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattc 4622843  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 99 - 300
Target Start/End: Complemental strand, 4626854 - 4626653
Alignment:
Q  99 tttagacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccatttta 198  Q
    ||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || | | || | ||||||     | |||  || |||  |||  ||    
T  4626854 tttagacaccaaactagattgtattcccggattgcagaactttcggctgaaggaccttcttaactttataaggacaacaaatcctaatgatgtcatggta 4626755  T
Q  199 gaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatatt 298  Q
    |||||| ||||||||| ||  ||||| || |||| ||| || |||||| | || |||||||| |||||||||||| ||||||||||||||||||| ||||    
T  4626754 gaatttctcattgaagcggcagatagatttcacagagcatcggctattgttttcaacacttacgatgaacttgagggtgatgtaatgaatgcgctctatt 4626655  T
Q  299 ct 300  Q
    ||    
T  4626654 ct 4626653  T

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Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 4558024 - 4557956
Alignment:
Q  103 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 171  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  4558024 gacactaaagtggattgtattccaggattgcagaactttcgactgaaggatctgcctgactttataagg 4557956  T

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Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 250 - 300
Target Start/End: Original strand, 4259534 - 4259584
Alignment:
Q  250 tttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 300  Q
    |||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  4259534 tttaacacttatgatgaacttgagagtgatgtaatgaatgtgctctattct 4259584  T

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Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 103 - 289
Target Start/End: Complemental strand, 4586535 - 4586349
Alignment:
Q  103 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagggttgaagatcgaaaagatcccattttagaat 202  Q
    ||||| ||||| |||||||||||||||||| ||||||||||||| |||||| |||||||| | |||||| ||   |||| ||| ||| | ||  ||||||    
T  4586535 gacactaaagtggactgtattccaggattggagaactttcgactaaaggatttgcctgactttataaggattactgatccaaatgattcgatcatagaat 4586436  T
Q  203 ttgtcattgaagtgg--gggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 289  Q
    || |||||||||  |  || |  |||  ||||||| ||||||| |||| ||||| |||| ||||||||||||||  |||||||| ||||    
T  4586435 ttatcattgaaggcgcaggaacggct--cacaaagactctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatg 4586349  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 155
Target Start/End: Original strand, 4612957 - 4613003
Alignment:
Q  109 aaagtagactgtattccaggattgcagaactttcgactgaaggatct 155  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||    
T  4612957 aaagtggactgtattcaaggattgcagaactttcgactgaaggatct 4613003  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 290
Target Start/End: Original strand, 4255985 - 4256041
Alignment:
Q  234 agcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgc 290  Q
    ||||||||||||| | |||||||||||| ||||||||||||| |||||| |||||||    
T  4255985 agcctctgctattgtttttaacacttataatgaacttgagagcgatgtattgaatgc 4256041  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 263 - 300
Target Start/End: Complemental strand, 4602531 - 4602494
Alignment:
Q  263 atgaacttgagagtgatgtaatgaatgcgctatattct 300  Q
    |||||||||||||||||||||||||||| |||||||||    
T  4602531 atgaacttgagagtgatgtaatgaatgcactatattct 4602494  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 229 - 288
Target Start/End: Complemental strand, 3172514 - 3172455
Alignment:
Q  229 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaat 288  Q
    |||||||| ||||||||| | || ||||||| | ||||||||||||||||||| ||||||    
T  3172514 cacaaagcttctgctattgttttcaacacttctaatgaacttgagagtgatgttatgaat 3172455  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 160
Target Start/End: Complemental strand, 4571871 - 4571814
Alignment:
Q  103 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctg 160  Q
    ||||| ||||| |||||||| |||||| || ||||||||||||||| |||| ||||||    
T  4571871 gacactaaagtggactgtatgccaggactgaagaactttcgactgagggatttgcctg 4571814  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Complemental strand, 4599063 - 4599011
Alignment:
Q  109 aaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctga 161  Q
    |||||||| |||||||| ||| |||| |||||||||||||| ||||| |||||    
T  4599063 aaagtagattgtattcctggactgcaaaactttcgactgaaagatcttcctga 4599011  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 16685519 - 16685587
Alignment:
Q  103 gacaccaaagtagactgtattccaggattgcagaactttcgactgaaggatctgcctgacataataagg 171  Q
    ||||| ||||| |||||||||||||||||||||||  ||||||||||||||||||||||| | ||||||    
T  16685519 gacactaaagtggactgtattccaggattgcagaatattcgactgaaggatctgcctgactttataagg 16685587  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 20863170 - 20863262
Alignment:
Q  197 tagaatttgtcattgaagtgggggatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatg 289  Q
    |||||||| |||||||||| |  ||||| || |||| ||||||||||||| | || || ||||   |||| |||||||||||||| |||||||    
T  20863170 tagaatttctcattgaagtagtagatagatttcacagagcctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatg 20863262  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 300
Target Start/End: Complemental strand, 24107136 - 24107077
Alignment:
Q  241 gctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 300  Q
    |||||| | |||||| |||||||||||||||||||||||||||||||| |||| ||||||    
T  24107136 gctattgtttttaacgcttatgatgaacttgagagtgatgtaatgaatacgctctattct 24107077  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 229 - 293
Target Start/End: Original strand, 3077 - 3141
Alignment:
Q  229 cacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgct 293  Q
    |||| ||| ||||| ||| | |||||||||||| |||||||||||||||||||| ||||||||||    
T  3077 cacagagcttctgcaattgtttttaacacttataatgaacttgagagtgatgtactgaatgcgct 3141  T

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Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 152
Target Start/End: Original strand, 3930 - 3971
Alignment:
Q  111 agtagactgtattccaggattgcagaactttcgactgaagga 152  Q
    ||||||| ||||||||||||||||||||||||| ||||||||    
T  3930 agtagacggtattccaggattgcagaactttcggctgaagga 3971  T

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Target: scaffold0477; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 220 - 300
Target Start/End: Original strand, 4039 - 4119
Alignment:
Q  220 gatagcttacacaaagcctctgctattatctttaacacttatgatgaacttgagagtgatgtaatgaatgcgctatattct 300  Q
    ||||| || |||||||||||  ||||| | || |||||||| |||||||||||||| | |||| ||||||| || ||||||    
T  4039 gatagattccacaaagcctcgactattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattct 4119  T

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