View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13864_low_46 (Length: 312)
Name: NF13864_low_46
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_46 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 45303878 - 45303582
Alignment:
| Q |
1 |
tgccctatgttttagtttttgtgttgaggttaattaaattctttctttgtttctacaggaatctgtttcaattcaaaggtcagcagcagca---aaagca |
97 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45303878 |
tgccctatgttttagtttttgagttgaggttaattaaattctttctttgtttctacaggaatctgtttcaattcaaaggtcagcagcagcagcaaaagca |
45303779 |
T |
|
| Q |
98 |
gatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaacttcttcttgtc |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303778 |
gatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaacttcttcttgtc |
45303679 |
T |
|
| Q |
198 |
ctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcatttcacctca |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303678 |
ctacagctagcatgtccaccacaaccacagtaacaactagacttatggacccaaaactcatcaagacccatgaactcaacttattcatttcacctca |
45303582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 45150682 - 45150590
Alignment:
| Q |
96 |
cagatggatggctccaattcgatgaagcagaattacagcaaagaagaaactttatggaaaggaatgccacgtggcatatgatgcagttaactt |
188 |
Q |
| |
|
||||| || |||||||||| |||||||| ||| |||||||| ||||||||||||||||||||||| || |||||||||||||| |||||||| |
|
|
| T |
45150682 |
cagatagacggctccaatttgatgaagctgaactacagcaagaaagaaactttatggaaaggaatgtcatgtggcatatgatgctgttaactt |
45150590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 45150492 - 45150446
Alignment:
| Q |
204 |
ctagcatgtccaccacaaccacagtaacaactagacttatggaccca |
250 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||| ||| ||||||||| |
|
|
| T |
45150492 |
ctagcatggccatcacaaccacagtaacaactacactaatggaccca |
45150446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University