View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_47 (Length: 311)
Name: NF13864_low_47
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_47 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 7 - 302
Target Start/End: Complemental strand, 26314264 - 26313959
Alignment:
| Q |
7 |
aaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaacatgcatgctttatcgttttctactcatgagactttacctaaagctttacatg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||| |
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| T |
26314264 |
aaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaacatgcatactccatcgttttctgctcatgagactttacctaaagctttacatg |
26314165 |
T |
|
| Q |
107 |
ttctgttataattaaattataagctagcttcacacattcataaatacctcaaattatttatt----------tannnnnnnnctttcctataatttggaa |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
26314164 |
ttctgttataattaaattataagctagcttcacacatttataaatacctcaaattatttattttattatttatttattttttctttcctataatttggaa |
26314065 |
T |
|
| Q |
197 |
ttggtctgagacaaattttactttacatttaaatacaaattttagttgctctcaaagttctggagattaattgatccatttatatatgtgtgttgtgact |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26314064 |
ttggtctgagacaaattttactttacatttaaatacaaattttagttgctctcaaagttctggagattaattgatccatttatatatgtgtgttgtgact |
26313965 |
T |
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| Q |
297 |
tgtgag |
302 |
Q |
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| |||| |
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| T |
26313964 |
tttgag |
26313959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 43109213 - 43109167
Alignment:
| Q |
7 |
aaaatttcaatggaagaaagtgctcaattcatttcaactgaattcaa |
53 |
Q |
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||||| ||||||||||||| |||| |||||||||||||||||||||| |
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| T |
43109213 |
aaaatatcaatggaagaaactgctgaattcatttcaactgaattcaa |
43109167 |
T |
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