View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_48 (Length: 303)
Name: NF13864_low_48
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_48 |
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| [»] scaffold0131 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 296
Target Start/End: Complemental strand, 28023151 - 28022870
Alignment:
| Q |
17 |
cacttggtcaatctgagaatcgtcgcgtgtctcgacaagtgacatggtacatgtattatcatcatgaattatataattatcatgaattctttctttnnnn |
116 |
Q |
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| T |
28023151 |
cacttggtcaatctgagaatcgccgcgtgtctcgacaagtgacatggtacatgtattatcatgatgaataatataattatcatgaattatttctttaaaa |
28023052 |
T |
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| Q |
117 |
nnnnnttatcatgaattatataattttatgtttttctatgaatttttgttatcaacattactaagattaaaatacttaaattttgttg--nnnnnnnnnc |
214 |
Q |
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| T |
28023051 |
aaaaattatcatgaattatataattttatgtttttctatgaattttggttatcaacattactaagattaaaatacttaaattttcttgaaaaaaaaaaac |
28022952 |
T |
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| Q |
215 |
taaattctttatctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataatcttgcctatgcta |
296 |
Q |
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| T |
28022951 |
taaattctttatctaaatttaatttattactttatgtgtagaactgaatctaaattgtatatgtataatcttgcctatgcta |
28022870 |
T |
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Target: scaffold0131 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0131
Description:
Target: scaffold0131; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 22004 - 21946
Alignment:
| Q |
225 |
atctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataat |
283 |
Q |
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| T |
22004 |
atctaaatttaatttattagtttatatgtagaattgaatctaagttttatatgtataat |
21946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 225 - 283
Target Start/End: Complemental strand, 27343837 - 27343779
Alignment:
| Q |
225 |
atctaaatttaatttattactttatatgtagaactgaatctaaattgtatatgtataat |
283 |
Q |
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| T |
27343837 |
atctaaatttaatttattagtttatatgtagaattgaatctaagttttatatgtataat |
27343779 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 13238647 - 13238696
Alignment:
| Q |
234 |
taatttattactttatatgtagaactgaatctaaattgtatatgtataat |
283 |
Q |
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| T |
13238647 |
taatttattagtttatatgtagaattgaatctaagttttatatgtataat |
13238696 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 293
Target Start/End: Complemental strand, 47695534 - 47695471
Alignment:
| Q |
230 |
aatttaatttattactttatatgtagaactgaatctaaattgtatatgtataatcttgcctatg |
293 |
Q |
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| T |
47695534 |
aatttaatttattagtttatatatagagttgagtctaaatttcatatgtataatattgcctatg |
47695471 |
T |
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