View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_49 (Length: 302)
Name: NF13864_low_49
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 45035548 - 45035257
Alignment:
| Q |
1 |
ttacacttcaattctcttgaataatttcttttgacaataacactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttctgtgc |
100 |
Q |
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| T |
45035548 |
ttacacttcaattctctcgaataatttcttttgacaatagtactccagaaaatttgagtgattgaatttactcctaagtattaacaattgtgttatgtgc |
45035449 |
T |
|
| Q |
101 |
ggatacaaatgtgtagtccaagattcgatccctggtattatcagattctctatatcaatcaagagtaaaa-ttttgggtggaaagttaactcactttcta |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
45035448 |
ggatacaaatgtgtagtccaagattcgatccctggtattatcggattctctatatcaatcaagagtaaaatttttgggtggaaagttaactca-----ta |
45035354 |
T |
|
| Q |
200 |
tggccgaccaaatcactctagctcaaagttgtattatgagttttccgaattatgcgatgtaatcttgagataatcctaaatctatttgtgatgatgt |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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| T |
45035353 |
tggccgaccaaatcactctagctcaaagttgtattatgagttttccgaattatgcgatgtaatcttcaaataatcctaaatctatttgtgatgatgt |
45035257 |
T |
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