View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_50 (Length: 297)
Name: NF13864_low_50
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_50 |
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| [»] scaffold0006 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 24470530 - 24470796
Alignment:
| Q |
18 |
caaaagacatacagttttataa--gcataattgcaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctcc |
115 |
Q |
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| T |
24470530 |
caaaagacataaagtcttataatagcataattacaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctcc |
24470629 |
T |
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| Q |
116 |
aggtccacatacaatgacatctttattcatgacagtagctattttagcagcaaatatttgttttcaaacatggtacttgcttattacctacaaaacaaat |
215 |
Q |
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| T |
24470630 |
agacccacatacaatgacatctttattcatgacagtagctattttagcagcaaaaatttgttatcaaacatggtacttgcttatcacctacaaaacaaat |
24470729 |
T |
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| Q |
216 |
gtaattgttttgtcaagaattgagggttgatgatcgtgcctttatccctcactatccatgtacctat |
282 |
Q |
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| T |
24470730 |
gtcattgttttgtcgagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctat |
24470796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 18 - 282
Target Start/End: Original strand, 24480599 - 24480854
Alignment:
| Q |
18 |
caaaagacatacagttttataa--gcataattgcaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctcc |
115 |
Q |
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| T |
24480599 |
caaaagacataaagttttataatagcataattacaatttcgagaatgctgctataaaccaaaagcacgtcattcataatttactacccaaatacttctcc |
24480698 |
T |
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| Q |
116 |
aggtccacatacaatgacatctttattcatgacagtagctattttagcagcaaatatttgttttcaaacatggtacttgcttattacctacaaaacaaat |
215 |
Q |
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| T |
24480699 |
agatccacatacaatgaca---ttattcatgagagttgctattttagcagcaaaaat--------aaacatgatacttgcttatcacctacaaaacaaat |
24480787 |
T |
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| Q |
216 |
gtaattgttttgtcaagaattgagggttgatgatcgtgcctttatccctcactatccatgtacctat |
282 |
Q |
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| T |
24480788 |
gtgattgttttgtcaagaattgagggttgatgatcgtgcctttatccctcactgtccatgtacctat |
24480854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 92
Target Start/End: Original strand, 54480566 - 54480620
Alignment:
| Q |
38 |
aagcataattgcaatttcgagaatgctgctataaaccaaaagcacgtcattcata |
92 |
Q |
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| T |
54480566 |
aagcatgatttcaattttgagaatgctgctataaaccaaaagcatgtcattcata |
54480620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Original strand, 127845 - 127914
Alignment:
| Q |
203 |
ctacaaaacaaatgtaattgttttgtcaagaattgagggttgatgatcgtgcctttatccctcactatcc |
272 |
Q |
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| T |
127845 |
ctacaaaaccagtgtaactattttgttaaaaatcgagtgttgatgattgtgcctttattcctcactatcc |
127914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Original strand, 127654 - 127705
Alignment:
| Q |
103 |
caaatacttctccaggtccacatacaatgacatc--tttattcatgacagta |
152 |
Q |
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| T |
127654 |
caaatacttctccagattcacatacaatgatatcaatttattcatgacagta |
127705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 152
Target Start/End: Original strand, 21516870 - 21516918
Alignment:
| Q |
106 |
atacttctccaggtccacatacaatgacatc--tttattcatgacagta |
152 |
Q |
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| T |
21516870 |
atacttctccagattcacatacaatgacatcaatttattcatgacagta |
21516918 |
T |
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