View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_51 (Length: 296)

Name: NF13864_low_51
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_51
NF13864_low_51
[»] chr8 (8 HSPs)
chr8 (14-281)||(26592083-26592347)
chr8 (41-254)||(25865642-25865855)
chr8 (41-254)||(41943886-41944099)
chr8 (67-170)||(43479673-43479776)
chr8 (67-281)||(38799410-38799624)
chr8 (67-281)||(38821893-38822107)
chr8 (70-167)||(44343984-44344081)
chr8 (67-119)||(38807073-38807125)
[»] chr4 (4 HSPs)
chr4 (31-281)||(34748670-34748920)
chr4 (73-278)||(24860464-24860669)
chr4 (43-172)||(40045368-40045497)
chr4 (41-152)||(40036080-40036191)
[»] chr5 (4 HSPs)
chr5 (66-281)||(12546997-12547212)
chr5 (73-281)||(12531407-12531615)
chr5 (79-152)||(9866668-9866741)
chr5 (75-155)||(9870022-9870102)
[»] chr7 (2 HSPs)
chr7 (67-257)||(21317513-21317703)
chr7 (67-281)||(3929960-3930174)
[»] chr2 (5 HSPs)
chr2 (67-281)||(13576263-13576477)
chr2 (41-281)||(34571419-34571659)
chr2 (208-275)||(34579054-34579121)
chr2 (208-275)||(34584803-34584870)
chr2 (52-167)||(34562636-34562751)
[»] scaffold0197 (1 HSPs)
scaffold0197 (67-248)||(30959-31140)
[»] chr1 (3 HSPs)
chr1 (41-167)||(7594104-7594230)
chr1 (210-257)||(18492747-18492794)
chr1 (210-260)||(7594401-7594451)


Alignment Details
Target: chr8 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 26592347 - 26592083
Alignment:
Q  14 tcacaactcacgaacaacaacaagatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggat 113  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26592347 tcacaactcacgaacaacaa---gatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatgaat 26592251  T
Q  114 agcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttg 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592250 agcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttg 26592151  T
Q  214 aaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctctt 281  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26592150 aaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctctt 26592083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 41 - 254
Target Start/End: Complemental strand, 25865855 - 25865642
Alignment:
Q  41 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 140  Q
    ||||||| || ||||| ||||| | |||||||||||||||||| ||||| || || || | ||||||||| || || || |  |||||||||||||||||    
T  25865855 aagcacgttcaccacgaatacgacgagcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaa 25865756  T
Q  141 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 240  Q
    ||| |||||||||||||| || ||||| || || ||    ||||||   |||||||| |  |||||||| |||||||| |||||||| ||||||||||||    
T  25865755 tcccacaagataagcctcagcagcttcctgaagtgcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaaga 25865656  T
Q  241 cgctggaaaggaag 254  Q
    |||||||| |||||    
T  25865655 cgctggaatggaag 25865642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 254
Target Start/End: Complemental strand, 41944099 - 41943886
Alignment:
Q  41 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 140  Q
    ||||||| || ||||| ||||| |  ||||| ||||| ||||| ||||| || ||||| | ||||||||| || || || |  || ||||||||||||||    
T  41944099 aagcacgttcaccacgaatacggcgtgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaa 41944000  T
Q  141 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 240  Q
    |||||| |||||||| || || ||||| || || ||    ||||||  |||||| || | ||||||||||||||||||||||||||| ||||||||||||    
T  41943999 tccaaccagataagcttctgctgcttcctgaagtgcaagaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaaga 41943900  T
Q  241 cgctggaaaggaag 254  Q
    || ||||| |||||    
T  41943899 cgttggaatggaag 41943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 67 - 170
Target Start/End: Original strand, 43479673 - 43479776
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||| ||||||||||||||||| || ||||| | ||||||||| |||||||| ||||||||||| |||||||| |||||||||||||| || || ||||    
T  43479673 gcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggctt 43479772  T
Q  167 cttg 170  Q
    ||||    
T  43479773 cttg 43479776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 38799624 - 38799410
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||| || || || ||||| || || ||||| |  ||||| |  ||||| || || ||||    
T  38799624 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38799525  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 266  Q
    |||| || || || || ||   |||||| || |  ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||    
T  38799524 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgag 38799425  T
Q  267 aagttcggtgctctt 281  Q
    ||| || ||||||||    
T  38799424 aagctcagtgctctt 38799410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 38821893 - 38822107
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||| || || || ||||| || || ||||| |  ||||| |  ||||| || || ||||    
T  38821893 gcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 38821992  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 266  Q
    |||| || || || || ||   |||||| || |  ||||| |||||||||||||||||||| |||||||||||||| ||||| |||||||| || |||||    
T  38821993 cttgaagagcggaaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgag 38822092  T
Q  267 aagttcggtgctctt 281  Q
    ||| || ||||||||    
T  38822093 aagctcagtgctctt 38822107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 167
Target Start/End: Complemental strand, 44344081 - 44343984
Alignment:
Q  70 agctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttc 167  Q
    |||||||||||||| ||||| || || || | ||||||||| ||||| || |  || ||||||||||||||||| || ||||||||||| || |||||    
T  44344081 agctgaatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttc 44343984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 119
Target Start/End: Complemental strand, 38807125 - 38807073
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgca 119  Q
    ||||| ||||| |||||||||||||||||||| | ||||||||| || |||||    
T  38807125 gcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgca 38807073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 31 - 281
Target Start/End: Complemental strand, 34748920 - 34748670
Alignment:
Q  31 caacaagatcaagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtat 130  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||| ||||| || || |||||||||||||    
T  34748920 caacaagatcaagcacgctcgccacggatacgcctagcgagctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtat 34748821  T
Q  131 cctcaaacaatccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctc 230  Q
    ||||||| |  ||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||| ||||| |||||    
T  34748820 cctcaaagagaccaacgagataagcctcagccgcttcttgcagcgccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctc 34748721  T
Q  231 acgaacaagacgctggaaaggaagtttgcgaatgagaagttcggtgctctt 281  Q
    |||||| ||||||||||| || |||||||| ||||| ||||||||||||||    
T  34748720 acgaaccagacgctggaaggggagtttgcggatgaggagttcggtgctctt 34748670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 73 - 278
Target Start/End: Complemental strand, 24860669 - 24860464
Alignment:
Q  73 tgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 172  Q
    ||||||||||| ||||| || ||||| | ||||||||| |||||||| || || ||||| ||||| | |||||| |||||||| || || |||||||| |    
T  24860669 tgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaa 24860570  T
Q  173 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttc 272  Q
    | || || |||||    ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| ||||| |||||||| || |||||||| ||    
T  24860569 gagcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctc 24860470  T
Q  273 ggtgct 278  Q
     |||||    
T  24860469 tgtgct 24860464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 43 - 172
Target Start/End: Complemental strand, 40045497 - 40045368
Alignment:
Q  43 gcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatc 142  Q
    ||||||||||||||||| | ||| || | ||| || ||||| ||||| |||||||| ||||| |||||||||||||| | |||||| |||||||| |  |    
T  40045497 gcacgctcgccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcgcacaagttagtgtcctcaaagagac 40045398  T
Q  143 caacaagataagcctccgccgcttcttgca 172  Q
    |||||||||| ||||| || || |||||||    
T  40045397 caacaagatatgcctcagcagcctcttgca 40045368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 40036191 - 40036080
Alignment:
Q  41 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 140  Q
    |||| ||||| |||||||| | ||| || | ||| || ||||| ||||| |||||||| ||||| ||||||||||| || | |||||| |||||||| |     
T  40036191 aagcgcgctcaccacggatcctccttgccaactggatgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagag 40036092  T
Q  141 tccaacaagata 152  Q
     |||||||||||    
T  40036091 accaacaagata 40036080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 66 - 281
Target Start/End: Original strand, 12546997 - 12547212
Alignment:
Q  66 agcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgct 165  Q
    |||||| |||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||| |||||||| |||||||||||||| || || |||    
T  12546997 agcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagct 12547096  T
Q  166 tcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatga 265  Q
    ||||| || || || ||||||  ||| || || |||||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || |    
T  12547097 tcttgaagagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataa 12547196  T
Q  266 gaagttcggtgctctt 281  Q
    |||| |||||||||||    
T  12547197 gaagctcggtgctctt 12547212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 73 - 281
Target Start/End: Complemental strand, 12531615 - 12531407
Alignment:
Q  73 tgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgca 172  Q
    |||||||||||||||||||||||||| | ||||||||| || || ||||| |||||||| |||||||| |||||||||||||| || || |||||||| |    
T  12531615 tgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaa 12531516  T
Q  173 gcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttc 272  Q
    | || || ||||||  ||| || || |||||||| || |||||||||||||| || ||||||||||| | |||||| ||||| || |  || ||||| ||    
T  12531515 gagcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctc 12531416  T
Q  273 ggtgctctt 281  Q
    |||||||||    
T  12531415 ggtgctctt 12531407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 152
Target Start/End: Original strand, 9866668 - 9866741
Alignment:
Q  79 tccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagata 152  Q
    |||| |||||| |||||||| | ||||||||| ||||| || ||||||||||| |||||||| |||||||||||    
T  9866668 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagata 9866741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 75 - 155
Target Start/End: Complemental strand, 9870102 - 9870022
Alignment:
Q  75 aatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagc 155  Q
    ||||||||||||||| |||||||| | ||||||||| |||||||| || ||| |||| | |||||| ||||||| ||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagc 9870022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 67 - 257
Target Start/End: Complemental strand, 21317703 - 21317513
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| || || ||||| |||||||| |||||||||||||| || |||||||    
T  21317703 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgctt 21317604  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagttt 257  Q
    |||| || || || ||||||  |||||| || | |||||| || |||||||| ||||| || |||||||||||||| ||||| ||||||||    
T  21317603 cttgaagagcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttt 21317513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 67 - 281
Target Start/End: Original strand, 3929960 - 3930174
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||| ||||||||||| ||||| |||||||| | ||||||||| || || || || || ||||| |||||||| ||||||||||| || || || ||||    
T  3929960 gcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagctt 3930059  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 266  Q
    |||| || || || ||||||   |||||||| || ||||| || |||||||| ||||| || |||||||| |  |  ||||| |||||||| | ||||||    
T  3930060 cttgaagagcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgag 3930159  T
Q  267 aagttcggtgctctt 281  Q
    |||||| ||||||||    
T  3930160 aagttcagtgctctt 3930174  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 67 - 281
Target Start/End: Complemental strand, 13576477 - 13576263
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| ||||| || || || |||||||||||||| |||||||||||||| || || ||||    
T  13576477 gcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagctt 13576378  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgag 266  Q
    |||| || || || ||||||  ||| ||||||||||||||||| |||||||| |||||||| || ||||| |  |  ||||| ||||| || |  |||||    
T  13576377 cttgaagagcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgag 13576278  T
Q  267 aagttcggtgctctt 281  Q
    ||| |||||||||||    
T  13576277 aagctcggtgctctt 13576263  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 41 - 281
Target Start/End: Original strand, 34571419 - 34571659
Alignment:
Q  41 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 140  Q
    ||||||| || ||||||||||| | |||||| ||||||||||||||||| || ||||| | ||||||||| || || || |  || ||||||||||||||    
T  34571419 aagcacgttcaccacggatacggcgagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaa 34571518  T
Q  141 tccaacaagataagcctccgccgcttcttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaaga 240  Q
     ||||| | ||| || ||||| ||||| || || ||    || |||  |||||| || || | ||||||||||||||| |||||||| ||||||||||||    
T  34571519 accaaccaaatatgcttccgctgcttcctgaagtgcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaaga 34571618  T
Q  241 cgctggaaaggaagtttgcgaatgagaagttcggtgctctt 281  Q
    |||||||| |||||||| || || | ||||||||| |||||    
T  34571619 cgctggaatggaagtttacggatcaaaagttcggtactctt 34571659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 34579054 - 34579121
Alignment:
Q  208 gtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggt 275  Q
    ||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| | |||||||||    
T  34579054 gtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggt 34579121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 275
Target Start/End: Original strand, 34584803 - 34584870
Alignment:
Q  208 gtcttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcggt 275  Q
    ||||||||||  |||||||| |||||||||||||||||||| |||||||| ||||| | |||||||||    
T  34584803 gtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggt 34584870  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 167
Target Start/End: Original strand, 34562636 - 34562751
Alignment:
Q  52 ccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagat 151  Q
    ||||||||||| | |||||| ||||||||||||||||| || ||||| | ||||||||| || || || |  || |||||||||||||| ||||| | ||    
T  34562636 ccacggatacggcaagcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaat 34562735  T
Q  152 aagcctccgccgcttc 167  Q
    | || ||||| |||||    
T  34562736 atgcttccgctgcttc 34562751  T

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Target: scaffold0197 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 248
Target Start/End: Complemental strand, 31140 - 30959
Alignment:
Q  67 gcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgctt 166  Q
    ||||| ||||||||||||||||| |||||||| | ||||||||| |||||||| || || ||||| |||||||| |||||||||||||| || || ||||    
T  31140 gcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagctt 31041  T
Q  167 cttgcagcgccgacacagcagagctctgaaaacggagatccgtcttgaaatcttgagcaatctcacgaacaagacgctggaa 248  Q
    |||| || || || ||||||  |||||| || | |||||  || |||||||| ||||| || |||||||||||||| |||||    
T  31040 cttgaagagcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaa 30959  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 167
Target Start/End: Original strand, 7594104 - 7594230
Alignment:
Q  41 aagcacgctcgccacggatacgcctagcaagctgaatatccttaggcatgatagtaacacgcttagcatggatagcgcagaggttagtatcctcaaacaa 140  Q
    ||||||| || ||||| || || | |||||||||||||||||| ||||| || || || | ||||||||| || || || || || || |||||||||||    
T  7594104 aagcacgttcaccacgaatgcgacgagcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaa 7594203  T
Q  141 tccaacaagataagcctccgccgcttc 167  Q
    |||||| || |||||||| || |||||    
T  7594204 tccaaccaggtaagcctcagctgcttc 7594230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 257
Target Start/End: Complemental strand, 18492794 - 18492747
Alignment:
Q  210 cttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagttt 257  Q
    |||||||||||||| ||| ||||||||||||| |||||| ||||||||    
T  18492794 cttgaaatcttgagaaatttcacgaacaagacactggaatggaagttt 18492747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 7594401 - 7594451
Alignment:
Q  210 cttgaaatcttgagcaatctcacgaacaagacgctggaaaggaagtttgcg 260  Q
    |||||||||||||||||| ||||| ||||||||||| || ||||| |||||    
T  7594401 cttgaaatcttgagcaatttcacggacaagacgctgaaatggaagcttgcg 7594451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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