View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_59 (Length: 252)
Name: NF13864_low_59
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 42248344 - 42248597
Alignment:
| Q |
1 |
taaatttctacaagttcaagactggttagttgattacggtttgaaacaattcatatattatcattaaggaagataattaaaaatgttcaagtttgaagtt |
100 |
Q |
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| T |
42248344 |
taaatttctgcaagttcaagactggttagttgattacagtttgaaacaattcatatattatcattaaggaagataattaaaaatgttcaagtttgaagtt |
42248443 |
T |
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| Q |
101 |
tagaaagtgaaattctcaagattgttccac---------------atattaggggctggtttatactttcnnnnnnnattaatttgattatgtgttctat |
185 |
Q |
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| T |
42248444 |
tagaaagtgaaattctcaagattgttccacataatgctcacacatatattaggggttggtttatactttctttttttattaatttgattatgtgttctat |
42248543 |
T |
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| Q |
186 |
tttgagcaagaaaatggtattta-cccttttctgcaaattttgattttctcgat |
238 |
Q |
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|||||| |||||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
42248544 |
tttgagtaagaaaatggtatttaccccttctctgcaaattttgattttctcgat |
42248597 |
T |
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