View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_6 (Length: 596)
Name: NF13864_low_6
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 592
Target Start/End: Original strand, 2969888 - 2970496
Alignment:
| Q |
1 |
aaatatacaaagtaagaataatgttgcacttagaaatttgttgttttgatacgtggacaccggtaatatgcgttgatgtccaacacgtgtcaaacactgg |
100 |
Q |
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| T |
2969888 |
aaatatacaaagtaagaataatgttgcacttagaaatttgttattttgatacgtggacaccggtaatatgcgttgatgtccaacacgtgtcaaacactag |
2969987 |
T |
|
| Q |
101 |
acacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaagtcttttgtctgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2969988 |
acacaccttcagtttacaggtaaattaaaattttcatatggtattaagattgtttgttacccatccaacaaggcttcttcctccaagtcttttgtctgta |
2970087 |
T |
|
| Q |
201 |
gttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatattctggtgccaaat |
300 |
Q |
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| T |
2970088 |
gttctcattccagtaataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccatattctgcatattctggtgccaaat |
2970187 |
T |
|
| Q |
301 |
agccccaggtaccaacaacctcagttgagtgtgtcaagtctttgttgtgagttcgtgctagtccaaaatctccaatctaata-----atcacgaaagaaa |
395 |
Q |
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| T |
2970188 |
aaccccaggtaccaacaacttcagttgagtgtgtcaagtctttgttgtgagttcgtgctagtccaaaatctccaatctaataatttcatcacgaaagaaa |
2970287 |
T |
|
| Q |
396 |
aatattagtcttaacaaaattcaactgttctttgtttggatgttttcattctgaaagtaaacacacaacttcagttgagtgtgttcttttagaccaaacc |
495 |
Q |
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| T |
2970288 |
agtattagtcttaacaaaattcaactgttctttgtttggatgttttcattctgaaagtaaacacacaacttcagttgagtgtgttatttgaaaccaaaca |
2970387 |
T |
|
| Q |
496 |
cacatat-----ag-------atggattaccaatggttgaagatcatgtgttacaaggatattgtttggtcggacatctctgtgtattacgttatttttg |
583 |
Q |
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| T |
2970388 |
cacatattctaaagttgatgtattaattaccaatggttgaagatcatgtgttacaaggatattgtttggtctgacatctctgtgtattatgttatttttg |
2970487 |
T |
|
| Q |
584 |
tgcaagtat |
592 |
Q |
| |
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|||| |||| |
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| T |
2970488 |
tgcaggtat |
2970496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 178 - 301
Target Start/End: Original strand, 2925368 - 2925491
Alignment:
| Q |
178 |
ttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatctgttctacttgacaccttgccata |
277 |
Q |
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| T |
2925368 |
ttcctccaagtcttttgtcagtagtcctcattccggttattagctcaacaagaaccactccaaaagaatatacatctgttttatttgatactttaccata |
2925467 |
T |
|
| Q |
278 |
ttctgcatattctggtgccaaata |
301 |
Q |
| |
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| ||||||||||||| ||| |||| |
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| T |
2925468 |
tgctgcatattctggggcccaata |
2925491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 154 - 330
Target Start/End: Complemental strand, 16330775 - 16330599
Alignment:
| Q |
154 |
ttgttacccatccaacaaggcttcttcctccaagtcttttgtctgtagttctcattccagtgataagctgtaataggaccactccaaaagaatatacatc |
253 |
Q |
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||||||||||||| ||||| ||| | ||||| |||||||||||| || |||||||| || || | ||| | || || |||||||| ||||| ||||| |
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| T |
16330775 |
ttgttacccatcccacaagacttttgtgtccaattcttttgtctgtggtcctcattcctgttattaactgaagaagcactactccaaaggaatacacatc |
16330676 |
T |
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| Q |
254 |
tgttctacttgacaccttgccatattctgcatattctggtgccaaatagccccaggtaccaacaacctcagttgagt |
330 |
Q |
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|| | ||||||| || ||| ||||||||||||||||||||| ||| || | || |||||||| || ||||||| |
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| T |
16330675 |
tgacttggttgacactttaccagattctgcatattctggtgccatataccctaatgttccaacaacatctgttgagt |
16330599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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