View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13864_low_61 (Length: 244)
Name: NF13864_low_61
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13864_low_61 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Original strand, 2969694 - 2969877
Alignment:
| Q |
18 |
caattaagtcattaatatttgtttacttaccgcaaccatacttagtcnnnnnnnagggtctctgcttagacatttctcagctagtcttatcatccaaaat |
117 |
Q |
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| T |
2969694 |
caattaagtcattaatatttgtttacttaccgcaaccatacttagtctttttttagggtccctgcttagacatttctcagctagtcttatcatccaaaat |
2969793 |
T |
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| Q |
118 |
aattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcctgc |
201 |
Q |
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| T |
2969794 |
aattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggataatttctctctcttaaaagaggccttgcctgc |
2969877 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 16331255 - 16331191
Alignment:
| Q |
106 |
atcatccaaaataattgatggtaatcatgagtatcaatgatcctttcatcaattagatctggata |
170 |
Q |
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| T |
16331255 |
atcatccaaaaaagctgatgacaatcataggtatccatcatcctttcatcaattagatctggata |
16331191 |
T |
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