View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13864_low_66 (Length: 214)

Name: NF13864_low_66
Description: NF13864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13864_low_66
NF13864_low_66
[»] chr4 (9 HSPs)
chr4 (34-197)||(31523638-31523801)
chr4 (15-149)||(54568412-54568546)
chr4 (19-131)||(22209231-22209343)
chr4 (19-151)||(53745287-53745419)
chr4 (19-151)||(22206135-22206268)
chr4 (49-150)||(26626129-26626230)
chr4 (44-103)||(8649653-8649712)
chr4 (44-103)||(8661460-8661519)
chr4 (19-90)||(23137517-23137588)
[»] chr3 (2 HSPs)
chr3 (34-197)||(33367699-33367862)
chr3 (19-90)||(33813577-33813648)
[»] chr1 (5 HSPs)
chr1 (38-197)||(49193600-49193759)
chr1 (58-148)||(39333049-39333139)
chr1 (49-150)||(17288023-17288124)
chr1 (14-71)||(45237661-45237718)
chr1 (19-90)||(19039262-19039333)
[»] chr8 (3 HSPs)
chr8 (15-149)||(8813450-8813584)
chr8 (19-103)||(44071388-44071471)
chr8 (14-80)||(16468570-16468636)
[»] chr5 (4 HSPs)
chr5 (15-149)||(12873953-12874087)
chr5 (59-151)||(14988498-14988590)
chr5 (19-89)||(16056592-16056662)
chr5 (18-59)||(11465280-11465321)
[»] chr7 (3 HSPs)
chr7 (15-148)||(37446804-37446937)
chr7 (16-75)||(25839361-25839420)
chr7 (19-63)||(4656262-4656306)
[»] chr6 (6 HSPs)
chr6 (16-149)||(27771102-27771234)
chr6 (19-151)||(24845670-24845802)
chr6 (35-142)||(23389228-23389335)
chr6 (15-75)||(27118798-27118858)
chr6 (18-96)||(24691742-24691820)
chr6 (19-151)||(8497727-8497860)
[»] scaffold0001 (1 HSPs)
scaffold0001 (23-148)||(414412-414537)
[»] chr2 (3 HSPs)
chr2 (14-151)||(9362075-9362212)
chr2 (49-150)||(28495494-28495595)
chr2 (23-149)||(5076837-5076964)


Alignment Details
Target: chr4 (Bit Score: 136; Significance: 4e-71; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 34 - 197
Target Start/End: Original strand, 31523638 - 31523801
Alignment:
Q  34 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 133  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||| ||||||||||||||    
T  31523638 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaataaaatgagatggta 31523737  T
Q  134 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgt 197  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31523738 acatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgt 31523801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Original strand, 54568412 - 54568546
Alignment:
Q  15 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 114  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||| ||||||| |||||| ||| |||||    
T  54568412 gagaagaagttaaacgaataagtcacaacactgtaaacatatatagttaatagaagttttaacaaaatttaaaaacatgttcccttctacgacaacaata 54568511  T
Q  115 gcaacaaaatgagatggtagtatacataagaaaaa 149  Q
    |||||||||||| ||||||| |||||||| |||||    
T  54568512 gcaacaaaatgaaatggtagcatacataaaaaaaa 54568546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 22209343 - 22209231
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 118  Q
    ||||||||| ||||| |||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||  ||| |||||||||    
T  22209343 agaagttaatcgaatcagtcgcaaaaatgtaaacatatatagttaatagaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaa 22209244  T
Q  119 caaaatgagatgg 131  Q
    |||||||| ||||    
T  22209243 caaaatgaaatgg 22209231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 53745287 - 53745419
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 118  Q
    ||||||||| | ||| |||| ||  |||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| |||||| ||    
T  53745287 agaagttaatcaaatcagtcgcattaatgtaaatatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaataggaa 53745386  T
Q  119 caaaatgagatggtagtatacataagaaaaagg 151  Q
    |||||| | ||||||| |||||||| |||||||    
T  53745387 caaaattaaatggtagcatacataacaaaaagg 53745419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 151
Target Start/End: Complemental strand, 22206268 - 22206135
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagca 117  Q
    |||| |||| ||||| | || ||| ||||||||||||||||||| |||||||||| |||  | ||| ||||||||||||  ||||| |||  ||||||||    
T  22206268 agaaattaatcgaatcaatcgcaataatgtaaacatatatagttgatagaagtttcatatcagttttaaaaatatgttcacttctaatactacaatagca 22206169  T
Q  118 acaaaatgagatggtagtatacataagaaaaagg 151  Q
    ||||||||| ||||||| |||||||| |||||||    
T  22206168 acaaaatgaaatggtagcatacataacaaaaagg 22206135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 26626129 - 26626230
Alignment:
Q  49 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 148  Q
    ||||||||  |||||||||||||||||||  |||||||||||||||||| | |||  ||| ||||| || |||||||| ||||||| |||||||| ||||    
T  26626129 aaacatattcagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaataacagcaaaatgaaatggtagcatacataacaaaa 26626228  T
Q  149 ag 150  Q
    ||    
T  26626229 ag 26626230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 8649653 - 8649712
Alignment:
Q  44 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 103  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8649653 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8649712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 8661460 - 8661519
Alignment:
Q  44 aatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 103  Q
    |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||    
T  8661460 aatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttcta 8661519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 23137517 - 23137588
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 90  Q
    ||||||||| ||||| | || ||| |||||||| |||||||||||||||||||||||||| |||||||||||    
T  23137517 agaagttaatcgaattaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaat 23137588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 34 - 197
Target Start/End: Complemental strand, 33367862 - 33367699
Alignment:
Q  34 aagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggta 133  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  33367862 aagtcacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaatatgttcccttctactacaacaatagcaacaaaatgagatggta 33367763  T
Q  134 gtatacataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgt 197  Q
    | |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  33367762 gcatacataagaaaaaagactcggcatgttaataagcatgttgatacaaacattaactaattgt 33367699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 33813577 - 33813648
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 90  Q
    ||||||||| ||||| | || |||  ||||||||||||||||||| |||||||||||||| |||||||||||    
T  33813577 agaagttaatcgaatcaatcgcaatcatgtaaacatatatagttattagaagttttataacaatttaaaaat 33813648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 38 - 197
Target Start/End: Original strand, 49193600 - 49193759
Alignment:
Q  38 cacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtat 137  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||| |||||||||| ||||||||||||||||||||||||| ||    
T  49193600 cacaacaatgtaaacatatatagttaataaaagttttataaaaatataaaaataagttcccttctactacaacaatagcaacaaaatgagatggtagcat 49193699  T
Q  138 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgt 197  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49193700 acataagaaaaaggactcggcatgttaataagcatgttgatataaacattaactaattgt 49193759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 58 - 148
Target Start/End: Original strand, 39333049 - 39333139
Alignment:
Q  58 tagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 148  Q
    ||||| ||||||||||||||  |||||||||||||||||| |||||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  39333049 tagttgatagaagttttatagcaatttaaaaatatgttcccttctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 39333139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 17288124 - 17288023
Alignment:
Q  49 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 148  Q
    ||||| || ||||||||||||||||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| ||| |||| ||||    
T  17288124 aaacagatttagttaatagaagttttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatatataacaaaa 17288025  T
Q  149 ag 150  Q
    ||    
T  17288024 ag 17288023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 71
Target Start/End: Complemental strand, 45237718 - 45237661
Alignment:
Q  14 tgagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagt 71  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||||||| |||||||||    
T  45237718 tgagaagaagttaaacgaataagtcgcaataatgtaaatatatatagtaaatagaagt 45237661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 19039262 - 19039333
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaat 90  Q
    |||| |||| ||||| | || ||| |||||||||||||||| |||||||||||||||||| |||| ||||||    
T  19039262 agaaattaatcgaatcaatcgcaataatgtaaacatatatatttaatagaagttttataacaattaaaaaat 19039333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 8813584 - 8813450
Alignment:
Q  15 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||| ||| |||||    
T  8813584 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagttttaacaaaatttaaaaatatgttcccttctacgacaacaata 8813485  T
Q  115 gcaacaaaatgagatggtagtatacataagaaaaa 149  Q
    |||||||| ||| ||||||| |||||||| |||||    
T  8813484 gcaacaaattgaaatggtagcatacataaaaaaaa 8813450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 44071388 - 44071471
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttcta 103  Q
    ||||||||| |||||  ||| ||| |||||||||||||||| |||||||||||||||||| ||||| |||||||||||| |||||    
T  44071388 agaagttaatcgaattggtcgcaaaaatgtaaacatatataattaatagaagttttataacaattt-aaaatatgttcccttcta 44071471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 16468570 - 16468636
Alignment:
Q  14 tgagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaa 80  Q
    ||||||||| ||||||||||||||  ||| |||||||| |||||||||||||||||||  |||||||    
T  16468570 tgagaagaatttaaacgaataagttgcaataatgtaaatatatatagttaatagaagtcatataaaa 16468636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 15 - 149
Target Start/End: Complemental strand, 12874087 - 12873953
Alignment:
Q  15 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 114  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |||||| ||| |||||    
T  12874087 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagatttaaaaatatgttcccttctacgacaacaata 12873988  T
Q  115 gcaacaaaatgagatggtagtatacataagaaaaa 149  Q
    |||||||||||||||| || ||||| | |||||||    
T  12873987 gcaacaaaatgagatgataatatacctcagaaaaa 12873953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 151
Target Start/End: Complemental strand, 14988590 - 14988498
Alignment:
Q  59 agttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaaagg 151  Q
    ||||||| |||||||||||| |||||||||||||||||| |||||  ||| ||||||||||||||||| | ||||| |||||||| |||||||    
T  14988590 agttaatggaagttttataacaatttaaaaatatgttcccttctaagacaacaatagcaacaaaatgaaaaggtagcatacataacaaaaagg 14988498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 16056592 - 16056662
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaa 89  Q
    ||||||||| ||||| | || ||| |||||||| |||||||||||||||||||||||||| ||||||||||    
T  16056592 agaagttaatcgaatcaatcgcaataatgtaaatatatatagttaatagaagttttataacaatttaaaaa 16056662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 11465280 - 11465321
Alignment:
Q  18 aagaagttaaacgaataagtcacaacaatgtaaacatatata 59  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||    
T  11465280 aagaaattaaacgaataagtcgcaataatgtaaacatatata 11465321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 15 - 148
Target Start/End: Original strand, 37446804 - 37446937
Alignment:
Q  15 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaata 114  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||| |||||||||||||||| |||||| ||| |||||    
T  37446804 gagaagaagttaaacgaataagtcgcaacaatgtaaacatatatcgttaatagaagttttaacaaattttaaaaatatgttcccttctacgacaacaata 37446903  T
Q  115 gcaacaaaatgagatggtagtatacataagaaaa 148  Q
    |||||||||||  ||||||| |||||||| ||||    
T  37446904 gcaacaaaatggaatggtagcatacataaaaaaa 37446937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 25839361 - 25839420
Alignment:
Q  16 agaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagtttta 75  Q
    |||||||||||||  |||||||| ||| ||||||||||||||||||| ||||||||||||    
T  25839361 agaagaagttaaataaataagtcgcaataatgtaaacatatatagttgatagaagtttta 25839420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 4656262 - 4656306
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagtta 63  Q
    ||||||||||||||||| || ||||||| ||||||||||||||||    
T  4656262 agaagttaaacgaataattcgcaacaatttaaacatatatagtta 4656306  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 27771234 - 27771102
Alignment:
Q  16 agaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatag 115  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| |||||| ||| ||||||    
T  27771234 agaagaagttaaacgaataagtcgcaacaatgtaaacatatatagttaatagaagtcttataaagattt-aaaatatgttcccttctacgacaacaatag 27771136  T
Q  116 caacaaaatgagatggtagtatacataagaaaaa 149  Q
    ||||||||||||||| || ||||| | |||||||    
T  27771135 caacaaaatgagatgataatatacctcagaaaaa 27771102  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 24845670 - 24845802
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaa 118  Q
    ||||||||| ||||| |||| ||  |||||||||||||||||||||||||| ||||| || |||||||||||||||||| |||||  ||| ||| || ||    
T  24845670 agaagttaatcgaatcagtcgcattaatgtaaacatatatagttaatagaaattttagaacaatttaaaaatatgttcccttctaagacaacaaaaggaa 24845769  T
Q  119 caaaatgagatggtagtatacataagaaaaagg 151  Q
    |||||| | ||||||| |||||||| |||||||    
T  24845770 caaaattaaatggtagcatacataacaaaaagg 24845802  T

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Target: chr6; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 35 - 142
Target Start/End: Complemental strand, 23389335 - 23389228
Alignment:
Q  35 agtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtag 134  Q
    |||| ||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||| || ||  ||| |||||| |||||||||| |||||||    
T  23389335 agtcgcaataatgtaaacatatatagttaaaagaagttttataacaatttaaaaatatgttcccttataagacaacaatagaaacaaaatgaaatggtag 23389236  T
Q  135 tatacata 142  Q
     |||||||    
T  23389235 catacata 23389228  T

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Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 15 - 75
Target Start/End: Original strand, 27118798 - 27118858
Alignment:
Q  15 gagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagtttta 75  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  27118798 gagaagaagttaaacgaatgagtcgcaacaatgtaaacatatatagttaatagaagtttta 27118858  T

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Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 24691820 - 24691742
Alignment:
Q  18 aagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttc 96  Q
    ||||| |||||| |||||||| ||||||||| ||||||||||||||||||||||  |||||||||||||||| ||||||    
T  24691820 aagaacttaaacaaataagtcgcaacaatgtgaacatatatagttaatagaagtcatataaaaatttaaaaacatgttc 24691742  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 8497727 - 8497860
Alignment:
Q  19 agaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaattt-aaaaatatgttcctttctactacatcaatagca 117  Q
    |||| |||| ||||| | |||||| |||||||| ||||||| || ||||||||||||||  | ||| ||||||||||||  |||||  ||| ||||||||    
T  8497727 agaatttaatcgaatcattcacaataatgtaaatatatataattgatagaagttttatatcagttttaaaaatatgttcacttctaagacaacaatagca 8497826  T
Q  118 acaaaatgagatggtagtatacataagaaaaagg 151  Q
    ||||||||| ||||||| ||| |||| |||||||    
T  8497827 acaaaatgaaatggtagcatagataacaaaaagg 8497860  T

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Target: scaffold0001 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 414537 - 414412
Alignment:
Q  23 gttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaa 122  Q
    ||||||||||||||||  | |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| ||||||    
T  414537 gttaaacgaataagtcgtagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 414438  T
Q  123 atgagatggtagtatacataagaaaa 148  Q
    |||| ||||||| |||||||| ||||    
T  414437 atgaaatggtagcatacataaaaaaa 414412  T

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Target: chr2 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 14 - 151
Target Start/End: Complemental strand, 9362212 - 9362075
Alignment:
Q  14 tgagaagaagttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaat 113  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||  |||||||||| ||||| ||||||  || ||| | | | ||    
T  9362212 tgagaagaagttaaacgaataagtcgcaacaatgtaaatatatatagttaatagaagtcatataaaaattaaaaaacatgttcacttatacaataaccat 9362113  T
Q  114 agcaacaaaatgagatggtagtatacataagaaaaagg 151  Q
    | ||||||||  ||||| ||| ||||||| ||||||||    
T  9362112 aacaacaaaaatagatgatagaatacatatgaaaaagg 9362075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 49 - 150
Target Start/End: Original strand, 28495494 - 28495595
Alignment:
Q  49 aaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaacaaaatgagatggtagtatacataagaaaa 148  Q
    |||||||| |||||||||||| |||||||  |||||||||||||||||| | |||  ||| |||||||| |||||||| ||||||| |||||||| ||||    
T  28495494 aaacatatttagttaatagaaattttatagcaatttaaaaatatgttccctcctaagacaacaatagcagcaaaatgaaatggtagcatacataacaaaa 28495593  T
Q  149 ag 150  Q
    ||    
T  28495594 ag 28495595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 149
Target Start/End: Complemental strand, 5076964 - 5076837
Alignment:
Q  23 gttaaacgaataagtcacaacaatgtaaacatatatagttaatagaagttttataaaaatttaaaaatatgttcctttctactacatcaatagcaac-aa 121  Q
    ||||||| | |||||| || |||||||||||||||||||| |||||| |||||  || ||||||| ||||||||| |||||| ||| |||||| ||| ||    
T  5076964 gttaaacaattaagtcgcagcaatgtaaacatatatagttgatagaaattttaacaacatttaaacatatgttcccttctacgacaacaatagaaacaaa 5076865  T
Q  122 aatgagatggtagtatacataagaaaaa 149  Q
    ||||| | ||||| |||||||| |||||    
T  5076864 aatgaaacggtagcatacataaaaaaaa 5076837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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