View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13865_high_3 (Length: 402)
Name: NF13865_high_3
Description: NF13865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13865_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 30 - 194
Target Start/End: Original strand, 49018853 - 49019017
Alignment:
| Q |
30 |
atgcatgagtgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
129 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49018853 |
atgcatgagtgattttggaactgtttgtgtgttgtgttggtgatcagaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggt |
49018952 |
T |
|
| Q |
130 |
aagggattaggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
49018953 |
aagggattaggaaaggtacttgcttattcattttcttcttccatttttttgattatcaatggtga |
49019017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 237 - 390
Target Start/End: Original strand, 49019059 - 49019210
Alignment:
| Q |
237 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019059 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
49019158 |
T |
|
| Q |
337 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
390 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49019159 |
tctgaagttt--gttttacatctgggttggaattatttattgaatttgatgatg |
49019210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 128; Significance: 5e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 39 - 194
Target Start/End: Original strand, 8344964 - 8345119
Alignment:
| Q |
39 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8344964 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
8345063 |
T |
|
| Q |
139 |
ggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
8345064 |
ggaaaggtacttgcttattcattttcttcttccattttcttgattatcaatggtga |
8345119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 39 - 194
Target Start/End: Complemental strand, 42824677 - 42824522
Alignment:
| Q |
39 |
tgattttggaactgtttgtgagttgtgttggtgatcaaaaccaattaattggaggatggtacaaagtagaggtttggctgttaagggaggtaagggatta |
138 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42824677 |
tgattttggaactgtttgtgtgttgtgttggtgaccagaaccaattaattggaggatggtacaaagtagaggtttgactgttaagggaggtaagggatta |
42824578 |
T |
|
| Q |
139 |
ggaaaggtacttgcttattcattttcttcttccatttttttcattaccaatggtga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||| ||||||||| |
|
|
| T |
42824577 |
ggaaaggtacttgcttattcattttcttcttccattttcttgattatcaatggtga |
42824522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 390
Target Start/End: Original strand, 8345161 - 8345314
Alignment:
| Q |
237 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
8345161 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
8345260 |
T |
|
| Q |
337 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8345261 |
tctgaagtttaaattttatatctggtttggaattatttattgaatttgatgatg |
8345314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 237 - 390
Target Start/End: Complemental strand, 42824453 - 42824300
Alignment:
| Q |
237 |
tccaggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggtatgtggcctttttacttgatttt |
336 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||| || ||||| |
|
|
| T |
42824453 |
tccaggaaaattgatgtagggatttcgtccaattcaacttctgatgaattgattggtgaaaatatagaatgtcaggtatgtggcctttttaattaatttt |
42824354 |
T |
|
| Q |
337 |
tctgaagtttaaattttatatctgggttggaattatttattgaatttgatgatg |
390 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42824353 |
tctgaagtttaaattttatatctggtttggaattatttattgaatttgatgatg |
42824300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 313
Target Start/End: Original strand, 50861266 - 50861337
Alignment:
| Q |
242 |
gaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
313 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||| |||||||||||||| ||| |||||||||||| ||||| |
|
|
| T |
50861266 |
gaaaattgatgttgggatttcgtcgaattcaactactggtgaattgattggtggaaatagagaatgccaggt |
50861337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 39073819 - 39073745
Alignment:
| Q |
239 |
caggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
313 |
Q |
| |
|
||||||||||||||| |||||| || ||||| |||| ||||||||||||| || |||||||||||||||||| |
|
|
| T |
39073819 |
caggaaaattgatgtttggattttgtcaaattcgacttttggtgaattgattgatggaaatagagaatgtcaggt |
39073745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 313
Target Start/End: Complemental strand, 36588170 - 36588096
Alignment:
| Q |
239 |
caggaaaattgatgtagggatttcatcgaattcaacttctggtgaattgattagtgaaaatagagaatgtcaggt |
313 |
Q |
| |
|
||||||||||||| | |||||||| || ||||| |||||||||||||||||| | | | ||||||| |||||||| |
|
|
| T |
36588170 |
caggaaaattgatcttgggatttcgtcaaattcgacttctggtgaattgattggcggatatagagattgtcaggt |
36588096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 390
Target Start/End: Original strand, 30331035 - 30331070
Alignment:
| Q |
355 |
tatctgggttggaattatttattgaatttgatgatg |
390 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30331035 |
tatctgggtcggaattatttattgaatttgatgatg |
30331070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University