View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13865_low_1 (Length: 432)
Name: NF13865_low_1
Description: NF13865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13865_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 416
Target Start/End: Original strand, 43468721 - 43469139
Alignment:
| Q |
11 |
catagggctcttagttattttaaaatcttatagtaaagtaagccttatggtggtaaattaagccatcaaaaaagttttataagataggataaaagaaaaa |
110 |
Q |
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| T |
43468721 |
catagggctcttagttattttaaaatcttatagtaaagtaagccttatggt---aaattaagccgtcaaaaaagttttataagataggataaaagaaaaa |
43468817 |
T |
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| Q |
111 |
ggatccgtatcaagcaaataaacattatcaagtgttatactattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcg |
210 |
Q |
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| T |
43468818 |
gggtccgtatcaagcaaataaacattatcaagtgttatacaattaaaaaatcaagacccatttaaaataatgtttagtcttgtaagattgactcatttcg |
43468917 |
T |
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| Q |
211 |
ataaccaccatt----------------cttaaacagaacttatgatggttttaaaaaacttaagaaatcattgtctcaaaaaacataataaatcgatca |
294 |
Q |
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| T |
43468918 |
ataaccaccattgaattatataaatgaatataaacagaacttatgatggttttaaaaaacttaagaaatcattgtctcaaaaaacataataaatcgatca |
43469017 |
T |
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| Q |
295 |
aattagttgcctggaacctcaattactccaaaatcaagataatcatacgtcaaatttgaatttggaaataatggccgtgtttcgtattgcggcagcttag |
394 |
Q |
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| T |
43469018 |
aattagttgcctggaacctcaattattccaaaatcaaaataatcatacgtcaaatttgaatttggaaataatggctatgtttcgtattgcggcagcttag |
43469117 |
T |
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| Q |
395 |
atggaaatgaagtattcttcta |
416 |
Q |
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| T |
43469118 |
atggaaatgaagtattcttcta |
43469139 |
T |
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