View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_high_10 (Length: 406)
Name: NF13866_high_10
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 386
Target Start/End: Original strand, 32286870 - 32287249
Alignment:
| Q |
11 |
gcagagaaagacattgtgaaacagcggccatggattgtggatatttccgtattcttacagagatatttttgctagatgcttatcttcccagtcactagca |
110 |
Q |
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| T |
32286870 |
gcagagaaagacattgtgaaacagcggccatggattgtggatatttccgtattcttacagagatatttttgctagatgcttatcttcccagtcactagca |
32286969 |
T |
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| Q |
111 |
acaattgagaaaattaatattaaattattagtatgattgatttagtaccaagtagcgggaaaccaactggattaccgatagattaagtaataaaaaattg |
210 |
Q |
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| T |
32286970 |
a---ttgagaaaattaatattaaattattagtatgattgatttagtaccaagtagcgggaaaccaactggattaccgatagattaattaataaaaaattg |
32287066 |
T |
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| Q |
211 |
ttcttattactccatccatc-------cttgtatttacacctaaatataattattttgttggttgacatcaaaattataggtgattgaactttaggtgag |
303 |
Q |
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| T |
32287067 |
ttcttattactccatccatcctataatcttgcatttacacctaaatataattattttgttggttgacatcaaaattataggtgattgaactttaggtgag |
32287166 |
T |
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| Q |
304 |
gaaacctctcatataatggtggtgaatactaacgcaggcgagtagaggaaaatggttctttctcgagtcaggtgtctaagtct |
386 |
Q |
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| T |
32287167 |
gaaacctctcatataatggtggtgaatactgacgcaggcgagtagagggaaatagttctttctcgagtttggtgtctgagtct |
32287249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 235 - 307
Target Start/End: Complemental strand, 39538486 - 39538415
Alignment:
| Q |
235 |
tatttacacctaaatataattattttgttggttgacatcaaaattataggtgattgaactttaggtgaggaaa |
307 |
Q |
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| T |
39538486 |
tatttacatctaaaaataaatatcatgttagtcgacatcaacat-ataggcgattgaactttaggtgaggaaa |
39538415 |
T |
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