View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_high_14 (Length: 364)
Name: NF13866_high_14
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_14 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 41636886 - 41637220
Alignment:
| Q |
18 |
agtaatgccgctaaaattctttcaaatagcctcttcaaataccctttcatccaaatatattgaacatcatttacctaattcaaactgtctttcaaaattc |
117 |
Q |
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| T |
41636886 |
agtaatgccgctaaaattctttcaaatagcctcttcaaataccctttcatccaaatatattgaacatcatttacctaattcaaactgtctttcaaaattc |
41636985 |
T |
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| Q |
118 |
aaaagttcacttccaaaactaactcatcttacaacactttcttcaacaacaagcaattccacactctctttcactcttcaacatcaactttccattcctt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
41636986 |
aaaagttcacttccaaaactaactcatcttacaacactttcttcaacaacaagcaattccaca--ctctttcactcttcaacatcaactctccattcctt |
41637083 |
T |
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| Q |
218 |
ctcttttccacttctaaccgttcacttgttccttcctttctctttaaccaaatatctcttaatattgacgcaaaaccaaataacctttcnnnnnnntcga |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |
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| T |
41637084 |
ctcttttccacttctaaccgttcacttgttccttcctttctctttaaccaaatatctcttaatattgacgcaaaaccaaataacctttcaaaaaaatcaa |
41637183 |
T |
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| Q |
318 |
ataagttcaaacggaaaccaacaatttctttcctatg |
354 |
Q |
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| T |
41637184 |
acaagttcatacggaaaccaacactttctttcctatg |
41637220 |
T |
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