View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13866_high_15 (Length: 334)
Name: NF13866_high_15
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 23087707 - 23087389
Alignment:
| Q |
19 |
aataagcttaatccaaacagggcctaaacatgttccaaaattaactaactgagatcacccaacatgttaagaaaaaccaactaaaaaattagaatctcac |
118 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087707 |
aataagctcaacccaaacagggcctaaacatgttccaaaattaactaactgagatcaccccacatgttaagaaaaaccaactaaaaaattagaatctcac |
23087608 |
T |
|
| Q |
119 |
tccaacatagttgctgattgaagatca----------------gcataaataaaaatcagaatgagaaaaactgtggctgattgaattgttctatgttat |
202 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23087607 |
tccaacatagttgctgattgacgatcaacatatataaatatcagcataaataaaaatcagaatgagaaaaactgtggctgattgaattgttatatgttat |
23087508 |
T |
|
| Q |
203 |
acttcttcctatactttgatcatactaaataatcttgatctatgaaattaactcatccatcatcttcatagtccatcctcatccaaatcttctgataata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23087507 |
acttcttcctatactttgatcatactaaataatcttaatctatgaaattaactcatccatcatcttcatagtccatcctcatccaaatcttctgataata |
23087408 |
T |
|
| Q |
303 |
aaggcccttcttcttcctc |
321 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
23087407 |
aaggcccttcttcttcctc |
23087389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 266
Target Start/End: Original strand, 19745837 - 19745895
Alignment:
| Q |
208 |
ttcctatactttgatcatactaaataatcttgatctatgaaattaactcatccatcatc |
266 |
Q |
| |
|
||||||| ||||||||||| || |||||||| ||||| |||||||||||| ||||||| |
|
|
| T |
19745837 |
ttcctatgctttgatcatattacataatcttaatctaacaaattaactcattcatcatc |
19745895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University