View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_high_2 (Length: 575)
Name: NF13866_high_2
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 575
Target Start/End: Original strand, 6298513 - 6299070
Alignment:
| Q |
19 |
taaagtgcagaaggctactccaagtagagcctatgaattgaaatatgacaatcctattgtgtttacctgnnnnnnnnnnnnnnnnnn-ctagaatgaaca |
117 |
Q |
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| T |
6298513 |
taaagtgcagaaggctactccaagtagagcctatgaattgaaatatgacaatcctattgtgtttacctgaaaaaacctaaaaaaaaaactagaatgaaca |
6298612 |
T |
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| Q |
118 |
tgggatgtgtatatgggattggtcacggagcatggcttgcaaagcagctgcttggagaccatattttgccatatttggtgaatgaaaatactttccaagt |
217 |
Q |
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| T |
6298613 |
tgggatgtgtatatgggattggtcacggagcatggcttgcaaagcagctgcttggagaccatattttgccatatttggtgaatgaaaatactttccaagt |
6298712 |
T |
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| Q |
218 |
cttggaaacatgctgctcttgttgaactggtgttaagcttctcatcttttcagctttcatttgtgcccttctcagcttgtttagaatcttatccattgat |
317 |
Q |
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| T |
6298713 |
cttggaaacatgctgctcttgttgaactggtgttaagcttctcatcttttcagctttcatttgtgcccttctcagcttgtttagaatcttatccattgat |
6298812 |
T |
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| Q |
318 |
gacgatttcttcttttccaatttcatctgtgtcaaacacttccataattaggaaagaaaactaaagatgcctctgcttttgtcactgtctaatgcattgc |
417 |
Q |
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| T |
6298813 |
gacgatttcttcttttccaatttcatctgtgtcaaacacttccataattaggaaagaaaactaaagatgcctctgcttttgtcgctgtctaatgcattgc |
6298912 |
T |
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| Q |
418 |
agattgtatatgaaaccacttttgcgttccttatgaaattgagttggattaggaacaacactaatcatatgaaaatgttcagttcagaacacaaacctca |
517 |
Q |
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| T |
6298913 |
agattgtatatgaaaccacttttgcgttccttatgaaattgagttggattaggaacaacgctaaccatatgaaaatgttcagttcagaacacaaacctca |
6299012 |
T |
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| Q |
518 |
agttttcttattgcagcttcagcctttgctttctgcaaactctcccatgcaatgattt |
575 |
Q |
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| T |
6299013 |
agttttcttattgcagcttcagcctttgctttctgcaaactctcccatgcaatgattt |
6299070 |
T |
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