View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_high_23 (Length: 251)
Name: NF13866_high_23
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 18 - 108
Target Start/End: Complemental strand, 40985082 - 40984992
Alignment:
| Q |
18 |
agaaggaacatcccctaacgttattaatcatttctctttacaacctcctcaaccttctcaaattattcatctttctcaactccataatcat |
108 |
Q |
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| T |
40985082 |
agaaggaacatcccctaacgttattaatcatttctctttacaacctcctcaaccttctcaaattattcatctttctcaactccataatcat |
40984992 |
T |
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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 162
Target Start/End: Complemental strand, 40984982 - 40984947
Alignment:
| Q |
127 |
aatgtctccactggccttcgtttatcatttgatgat |
162 |
Q |
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| T |
40984982 |
aatgtctccactggccttcgtttatcatttgatgat |
40984947 |
T |
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