View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_high_31 (Length: 223)
Name: NF13866_high_31
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_high_31 |
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Alignment Details
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 12207403 - 12207496
Alignment:
| Q |
110 |
taaaatattatgatatgtgacggagttagagagaagatgccataagcttaaatcataatctatcacgatacattgaaaattaagagagaagaacaca |
206 |
Q |
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| T |
12207403 |
taaaatattatgatatgtgacggagttagagagaagatgtcataagcttaaatcataatctat---gatacatctaaaattaagagagaagaacaca |
12207496 |
T |
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Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 110 - 206
Target Start/End: Original strand, 12451831 - 12451924
Alignment:
| Q |
110 |
taaaatattatgatatgtgacggagttagagagaagatgccataagcttaaatcataatctatcacgatacattgaaaattaagagagaagaacaca |
206 |
Q |
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| T |
12451831 |
taaaatattatgatatgtgacggagttagagagaagatgtcataagcttaaatcataatctat---gatacatctaaaattaagagagaagaacaca |
12451924 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 12206584 - 12206646
Alignment:
| Q |
12 |
atgaattgatagagtctccgtttaagagaaatataaacagaaatgtttgaaaaatcataattg |
74 |
Q |
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| T |
12206584 |
atgaattgatagattctccgtttaagagaaatataaacagaaatgtttgaaaaatcataattg |
12206646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 74
Target Start/End: Original strand, 12451012 - 12451074
Alignment:
| Q |
12 |
atgaattgatagagtctccgtttaagagaaatataaacagaaatgtttgaaaaatcataattg |
74 |
Q |
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| T |
12451012 |
atgaattgatagattctccgtttaagagaaatataaacagaaatgtttgaaaaatcataattg |
12451074 |
T |
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