View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13866_high_9 (Length: 416)

Name: NF13866_high_9
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13866_high_9
NF13866_high_9
[»] chr4 (3 HSPs)
chr4 (13-199)||(9813972-9814160)
chr4 (253-400)||(9814214-9814361)
chr4 (75-116)||(17512764-17512805)
[»] chr1 (3 HSPs)
chr1 (13-200)||(42663303-42663490)
chr1 (253-400)||(42663543-42663689)
chr1 (27-80)||(17695202-17695255)
[»] chr8 (2 HSPs)
chr8 (253-400)||(5018147-5018294)
chr8 (13-193)||(5018355-5018535)
[»] chr3 (5 HSPs)
chr3 (13-200)||(23165362-23165549)
chr3 (253-400)||(23165603-23165750)
chr3 (13-180)||(29182704-29182871)
chr3 (263-387)||(42883513-42883635)
chr3 (39-78)||(31706572-31706611)
[»] chr5 (2 HSPs)
chr5 (27-78)||(29766542-29766593)
chr5 (335-383)||(15918931-15918979)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 9813972 - 9814160
Alignment:
Q  13 aatataacggtttgatgccatttcagctagtgttctgttgatggaccaatctaagactaaa--ctttatcataaagtctcaattaaattcaattcatcta 110  Q
    |||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||    
T  9813972 aatataacagtttgatgccatttcagttagtattctgttgatggaccaatctaagactaaaaactttatcataaagtctcaattaaattcaattcatcta 9814071  T
Q  111 agattaagaaaataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggct 199  Q
    |||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  9814072 agattaagaaaataatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcagcataatcttctggct 9814160  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 253 - 400
Target Start/End: Original strand, 9814214 - 9814361
Alignment:
Q  253 gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga 352  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9814214 gtacaagtcatttctcacttgctaacaagtgactatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga 9814313  T
Q  353 caggctatgagttacttaagaaaattaaggtacttatagtgttggttt 400  Q
     || ||||||||||||||||||||||||||||||||||||||||||||    
T  9814314 gagactatgagttacttaagaaaattaaggtacttatagtgttggttt 9814361  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 17512764 - 17512805
Alignment:
Q  75 tttatcataaagtctcaattaaattcaattcatctaagatta 116  Q
    ||||||||||| |||||||| |||||||||||| ||||||||    
T  17512764 tttatcataaactctcaattgaattcaattcatttaagatta 17512805  T

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Target: chr1 (Bit Score: 136; Significance: 8e-71; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 42663303 - 42663490
Alignment:
Q  13 aatataacggtttgatgccatttcagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaag 112  Q
    ||||||||||||||||| |||||||||||||||||| ||   |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42663303 aatataacggtttgatgtcatttcagctagtgttctatttgaggactaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaag 42663402  T
Q  113 attaagaaaataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggctg 200  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | ||||||||| ||||||    
T  42663403 attaagaaaataatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatcttatggctg 42663490  T

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Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 253 - 400
Target Start/End: Original strand, 42663543 - 42663689
Alignment:
Q  253 gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga 352  Q
    |||||||||||||||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42663543 gtacaagtcatttctcacttgctaacaagtgactatttgtggtttt-gtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga 42663641  T
Q  353 caggctatgagttacttaagaaaattaaggtacttatagtgttggttt 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42663642 caggctatgagttacttaagaaaattaaggtacttatagcgttggttt 42663689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 80
Target Start/End: Original strand, 17695202 - 17695255
Alignment:
Q  27 atgccatttcagctagtgttctgttgatggaccaatctaagactaaactttatc 80  Q
    ||||||| |||||||||||  ||||| |||| || |||||||||||||||||||    
T  17695202 atgccatgtcagctagtgtcatgttggtggatcactctaagactaaactttatc 17695255  T

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Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 253 - 400
Target Start/End: Complemental strand, 5018294 - 5018147
Alignment:
Q  253 gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga 352  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5018294 gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga 5018195  T
Q  353 caggctatgagttacttaagaaaattaaggtacttatagtgttggttt 400  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  5018194 caggctatgagttacttaagaaaattaaggtacttatagcgttggttt 5018147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 5018535 - 5018355
Alignment:
Q  13 aatataacggtttgatgccatttcagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaag 112  Q
    ||||||||||||||||| |||||||||||||||||| ||   |||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  5018535 aatataacggtttgatgtcatttcagctagtgttctatttgaggactaatctaagactaaactttatcataaagtctcaattaaattaaattcatgtaag 5018436  T
Q  113 attaagaaaataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatctt 193  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | |||||||||    
T  5018435 attaagaaaataatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatctt 5018355  T

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Target: chr3 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 23165362 - 23165549
Alignment:
Q  13 aatataacggtttgatgccatttcagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaag 112  Q
    ||||||||||||||||| |||||||||||||||||||||   |||| |||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  23165362 aatataacggtttgatgtcatttcagctagtgttctgtttgaggactaatctaagactaaaatttatcataaagtctcaattaaattaaattcatataag 23165461  T
Q  113 attaagaaaataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagccttagcatcatcttctggctg 200  Q
    |||||||||||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| | ||||||||||||||||    
T  23165462 attaagaaaataatttagagtttagagtaaattactggcatagtaggagaagcagtggcagaatagcctcaacatcatcttctggctg 23165549  T

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Target: chr3; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 253 - 400
Target Start/End: Original strand, 23165603 - 23165750
Alignment:
Q  253 gtacaagtcatttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatga 352  Q
    |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  23165603 gtacaagtcatttctcacttgctaacaagtgactatttgtggtttttgtagggttccaaagtaaatttagtcatcagagaccattgcatgccagggatga 23165702  T
Q  353 caggctatgagttacttaagaaaattaaggtacttatagtgttggttt 400  Q
    |||||||||||||||||||||||| |||||||||||||| ||||||||    
T  23165703 caggctatgagttacttaagaaaaataaggtacttatagcgttggttt 23165750  T

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Target: chr3; HSP #3
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 29182871 - 29182704
Alignment:
Q  13 aatataacggtttgatgccatttcagctagtgttctgttgatggaccaatctaagactaaactttatcataaagtctcaattaaattcaattcatctaag 112  Q
    |||||||| |||||||| |||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  29182871 aatataacagtttgatgtcatttcagttagtgttctgctgaaggatcaatctaagactaaactttatcataaaatctcaattaaattcaattaatctaag 29182772  T
Q  113 attaagaaaataatttagagtttagagtaagtttctcgcatagtaggagaagcagtggcaggatagcc 180  Q
    |||||||||||||||||||||||||||||  || || |||||||||||||||||||||||| ||||||    
T  29182771 attaagaaaataatttagagtttagagtatattactggcatagtaggagaagcagtggcagaatagcc 29182704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 263 - 387
Target Start/End: Complemental strand, 42883635 - 42883513
Alignment:
Q  263 tttctcacttgctaacaagtgattatttgtgatttttgtagggttccaaagtaaatttagtcatcacagaccattgcatgccagggatgacaggctatga 362  Q
    |||||||||||||||||||||  |||||||| ||||| |||||  ||||||| || ||| ||||||| ||| | ||||||||||||||||| ||||||||    
T  42883635 tttctcacttgctaacaagtg--tatttgtggtttttatagggacccaaagtgaacttaatcatcactgactactgcatgccagggatgactggctatga 42883538  T
Q  363 gttacttaagaaaattaaggtactt 387  Q
    ||| |||||||||||||||||||||    
T  42883537 gttgcttaagaaaattaaggtactt 42883513  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 31706572 - 31706611
Alignment:
Q  39 ctagtgttctgttgatggaccaatctaagactaaacttta 78  Q
    ||||||| |||||||||||||| |||||||||||||||||    
T  31706572 ctagtgtcctgttgatggaccactctaagactaaacttta 31706611  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 78
Target Start/End: Original strand, 29766542 - 29766593
Alignment:
Q  27 atgccatttcagctagtgttctgttgatggaccaatctaagactaaacttta 78  Q
    ||||||| ||| ||||||||||  |||||||||| |||||||||||||||||    
T  29766542 atgccatgtcaactagtgttctactgatggaccactctaagactaaacttta 29766593  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 383
Target Start/End: Original strand, 15918931 - 15918979
Alignment:
Q  335 attgcatgccagggatgacaggctatgagttacttaagaaaattaaggt 383  Q
    ||||||||||||| ||||| || |||||||| ||||||||||| |||||    
T  15918931 attgcatgccaggaatgactggttatgagttgcttaagaaaatcaaggt 15918979  T

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