View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_1 (Length: 671)
Name: NF13866_low_1
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 240 - 540
Target Start/End: Original strand, 10577573 - 10577873
Alignment:
| Q |
240 |
ggatgaaatggatacaacacagcaaggacacggccattggatgttaccaagataagaacattcagtacatacaaatttatctctatttaaaaacaaataa |
339 |
Q |
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| T |
10577573 |
ggatgaaatggatacaacacagcaaggacacggccattggatgttaccaagataagaacattcagtacatacaaatttatctctatttaaaaacaaataa |
10577672 |
T |
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| Q |
340 |
tacagaatctgaacacgacaaaaggaccaatattaggtaaaaagggaaattatagacataacctatatcctccttttaggtattttacaggtcaaaatgt |
439 |
Q |
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| T |
10577673 |
tacagaatctgaacatgacaaaaggaccaatattaggtaaaaagggaaattatagacataacctatatcctccttttaggtattttacaggtcaaaatgt |
10577772 |
T |
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| Q |
440 |
caaggcaaagatgtatagctattnnnnnnnnnnnnnntgtatatggtctataacttgtgttactaggtaaaagatcatgaactgatttggtttttagcaa |
539 |
Q |
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| T |
10577773 |
caaggcaaagatgtatagctattaaaaaaataaaaaatgtatatggtctataacttgtgttactaggtaaaagatcatgaactgatttggtttttagcaa |
10577872 |
T |
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| Q |
540 |
t |
540 |
Q |
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| T |
10577873 |
t |
10577873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 10577349 - 10577507
Alignment:
| Q |
16 |
aatataataggaaggatataaagatcagatttgaacaacaatacccaacttcaaaccctggccgaaacaaactttagtcaagttttacttacctcccgac |
115 |
Q |
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| T |
10577349 |
aatacaattggaaggatataaagatcagatt-gaacaacaatacccaacttcaaaccctggctgaaacaaacttcagtcaagttttacttacctcccgac |
10577447 |
T |
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| Q |
116 |
caaactacagattaccagtataactttccccctataaacttgaggcttaaggccatgaag |
175 |
Q |
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| T |
10577448 |
caaactacagattaccagtataactttccccctataaacttgaggcttaaggccatgaag |
10577507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 600 - 653
Target Start/End: Original strand, 10577933 - 10577986
Alignment:
| Q |
600 |
ttacctacagcactagcagggtcatagcaggacatgaatgaaatccacacataa |
653 |
Q |
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| T |
10577933 |
ttacctacagcactagcagggtcatagcaggacatgaatgaaatccacacataa |
10577986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 345 - 404
Target Start/End: Original strand, 1614381 - 1614440
Alignment:
| Q |
345 |
aatctgaacacgacaaaaggaccaatattaggtaaaaagggaaattatagacataaccta |
404 |
Q |
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| T |
1614381 |
aatctgaacttgacaaaaggaccaatattaggcataaagggaagttatagccatcaccta |
1614440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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