View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_11 (Length: 390)
Name: NF13866_low_11
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 13 - 372
Target Start/End: Complemental strand, 53999780 - 53999429
Alignment:
| Q |
13 |
aatatataccaataatggaaggagtgttattatgataatgataaaaagaaatgtaaagctttagtgttcaattgttgtgataagtagcatgtttatcact |
112 |
Q |
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| T |
53999780 |
aatatataccaataatggaaggagt----ttatgataatgataaaaagaaatgtaaagctttagtgttcaattgttgtgataagtagcatgtttatcact |
53999685 |
T |
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| Q |
113 |
tctaaacaaaagattgaaatgtgactcaatgaatgtcaagtagtttgagaattacataatctcattaattttacaacacatatatatactcaagaaaact |
212 |
Q |
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| T |
53999684 |
tctaaacaaaagattgaaatgtgactcgatgaatgtcaagtagtttgagaattacataatctcattaattttacaacacatata----ctcaagaaaact |
53999589 |
T |
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| Q |
213 |
cataatccctggtttggccaattgactcaatttttacaacatattatgagtctaagccggctgcaattttgtctcttgaatttctggtttgccgagctcc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
53999588 |
cataatccctggtttggccaattgactcaatttttacaacatattatgagtctaagccggctgcaattttgtctctagaatttctggtttgccgagctcc |
53999489 |
T |
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| Q |
313 |
aaaaacaccaatcttccaattatgtctcatggctcatcaacctcttgaatttgtacaatg |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53999488 |
aaaaacaccaatcttccaattatgtctcatggctcatcaacctcttgaatttgtacaatg |
53999429 |
T |
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