View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13866_low_12 (Length: 384)
Name: NF13866_low_12
Description: NF13866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13866_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 7 - 368
Target Start/End: Original strand, 44824818 - 44825179
Alignment:
| Q |
7 |
tccaagaatattcccaatggataaataaatctggaggcataatgaaactcaatcccaaccacctcattaaactagcccagatagacattgtgtctcgaca |
106 |
Q |
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| T |
44824818 |
tccaacaacattcccaatggataaataaatctggaggcataatgaaactcaatcccaaccacctcattaaattagcccagatagacattgtgtctcgaca |
44824917 |
T |
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| Q |
107 |
atggagaaaaaggtggtttaccgattcctccacggtctcacacgacacacaccacaaggtggcctccagtggaagtatattcctcccacaaagatttgtt |
206 |
Q |
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| T |
44824918 |
atggagaaaaaggtggtttaccgattcctccacggtctcacacgacacacaccacaaggtggcctccagtggaagtatattcctcccacaaagatttgtt |
44825017 |
T |
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| Q |
207 |
cttgttggaacacgatacaagaggactttccaactcaacgccgctgcttttagcatagctggacttctccaaaaactcgattagccaaacaattcctacc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44825018 |
cttgttggaacacgatacaagaggactttccaactcaaagccgctgcttttagcatagctggacttctccaaaaactcgattagccaaacaattcctacc |
44825117 |
T |
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| Q |
307 |
cctctccatcttggtctcttatagtctatatgctaattctgaaactatgagatgaactatct |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44825118 |
cctctccatcttggtctcttatagtctatatgctaattctgaaactatgagatgaactatct |
44825179 |
T |
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